Skip to content

NEXT_TASKS: DisMech knowledge-gaps + datasets + QC dashboard adoption (claw#7) #160

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
realmarcin merged 1 commit into from
Jun 18, 2026
Merged

NEXT_TASKS: DisMech knowledge-gaps + datasets + QC dashboard adoption (claw#7) #160

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
17 changes: 17 additions & 0 deletions NEXT_TASKS.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -81,3 +81,20 @@ ruff and black in `pyproject.toml` (they are externally-canonical and pin-locked
local restyling would break the pin). `lint` + `verify-validator-pin` are both
green again. NOTE for sibling Mech repos: if any also run a ruff/black gate, apply
the same exclude.

## Adopt DisMech knowledge-gaps + datasets + QC dashboard (claw#7)

Coordinated cross-Mech adoption of DisMech's domain-general features. Full plan,
locked decisions, and DisMech schema references live in culturebotai-claw#7 (the
shared, pinned LinkML module is authored once and vendored across all four Mechs).
This repo's slice:
- Knowledge gaps — add a `discussions` slot (broad `Discussion` supertype; `kind`
incl. KNOWLEDGE_GAP / OPEN_QUESTION / CONTROVERSY / CURATION_TODO) to
`MicrobialCommunity`, imported from the shared module; bind `attaches_to`
anchors to `ecological_interactions#…`. Wire a `knowledge-gap-scan` recipe over
the existing Edison harness.
- Datasets — migrate the existing `AssociatedDataset` (DatasetRepositoryEnum) to
the canonical shared `Dataset` (data-preserving; reconcile repository/accession
into the canonical enum, which also carries omics `data_type`).
- QC dashboard — adopt the generalized dashboard from Phase 3 (CommunityMech
currently has only the `qc` recipe, no rendered dashboard).