Releases: CoBrALab/AllenHumanReferenceAtlas_Classified
Releases · CoBrALab/AllenHumanReferenceAtlas_Classified
Release list
v1.0.0 — classified volumes + tissue priors
Generated tissue classification and probabilistic priors derived from the
Allen Human Reference Atlas - 3D, 2020 (ontology StructureGraph 16), with
non-brain CSF sourced from a SynthStrip mask of the MNI ICBM152 2009b T1.
All assets are produced reproducibly by generate_all.sh (see README). They
are attached here because the repo gitignores generated/large files.
Contents:
- classify.nii.gz - primary 9-class tissue segmentation (uint8, 0.5mm, values 0-8)
- classify_volumes.tar.gz - 9-class + 4-class + 3-class + cbmerge segmentations
- lookup_tables.tar.gz - all id->tissue LUTs + scheme map.csv definitions
- priors_9class.tar.gz - prior01..08 (float32 0-1, 2mm FWHM, Atropos-ready)
- priors_coarse.tar.gz - priors for the 4-class / 3-class / cbmerge schemes
Priors: 2 mm FWHM Gaussian (DiscreteGaussian), per-voxel normalized to sum 1.
Atropos usage: -p prior%02d.nii.gz -k 8 (or prior__%02d.nii.gz for coarse).
Sources: Allen Human Reference Atlas 3D 2020 (CC BY 4.0); MNI ICBM152 2009b.