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Store neighbours as an obsp graph instead of strings - #370

Merged

newmana merged 8 commits into

newmana/cleanup_spot_neighbours

Nov 7, 2026

Merged

Store neighbours as an obsp graph instead of strings#370
newmana merged 8 commits into
masterfrom
newmana/cleanup_spot_neighbours

Commits on Nov 7, 2026
- Remove spot_neighbours and spot_neigh_bcs. They added 25% run time and large amount of disk. Also replaced sorting with chunks that are the correct order in score_spots.
  newmana
  committed
  9ae5d78
- Fix anndata to store obsp as well. Improve error message. Add check for obsp round trip.
  newmana
  committed
  72bfa1c
- Start adding 1.5.1 notes.
  newmana
  committed
  b50cda4
- Start adding 1.5.1 notes.
  newmana
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  6fae6a3
- Remove last bits of list.
  newmana
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  8c6d893
- Remove final calls to get_neighbourhoods and creating string based graphs.
  newmana
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  c83abe8
- Fix formatting.
  newmana
  committed
  f99d89e
- Missing type.
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  aabad5e