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Point VisCy and waveorder links at their Biohub GitHub home - #539
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VisCy and waveorder moved from mehta-lab to Biohub on GitHub. Rewrite the git URLs in the root and qc pyproject.toml, uv.lock and the HF Space requirements by hand, keeping each locked commit (waveorder 22a0f72e, the Space's VisCy 84cc1ae). `uv lock --locked` passes on the edited lock and fails on the old one. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_015kuht3npKtb2o5E6h19xbA
VisCy and waveorder moved from mehta-lab to Biohub. GitHub redirects the old repository URLs, but not GitHub Pages: mehta-lab.github.io/VisCy now returns 404, so the README's docs links and zensical's site_url move to biohub.github.io/VisCy. Also updates the package URLs, badges, CITATION.cff files, contributing guides and example permalinks. The /hpc/projects/virtual_staining/.../mehta-lab/ paths are filesystem directories and stay. The applications/dynacell files that #538 already edits get the same change in #538. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_015kuht3npKtb2o5E6h19xbA
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VisCy and waveorder moved from
mehta-labtoBiohubon GitHub. GitHub redirects the old repository URLs, but not GitHub Pages:mehta-lab.github.io/VisCynow returns 404 (the docs are atbiohub.github.io/VisCy, 200).Changes
qcpyproject.toml,uv.lock, and the HF Spacerequirements.txtVisCy pins. URLs were rewritten by hand, keeping every locked commit (waveorder22a0f72e, the Space's VisCy84cc1ae7).uv lock --lockedexits 0 on the edited lock and 1 on the old one.urls.*, README badges and docs links,zensical.tomlsite_url, bothCITATION.cfffiles, the contributing guides, and example and notebook permalinks.Left as is
/hpc/projects/virtual_staining/{models,datasets}/mehta-lab/...are filesystem paths, not links.applications/dynacellfiles that docs(dynacell): point code links at applications/dynacell on main #538 already edits get the same change there (5b08119), so the two PRs don't conflict.Tests
applications/dynacell/tests/test_croissant.py: 17 passed.🤖 Generated with Claude Code
https://claude.ai/code/session_015kuht3npKtb2o5E6h19xbA