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Replace nextflow components with Metaflow

Status: Open.

#30 In AltinLab/af3-linear-epitopes;

· ljwoods2 opened on Jul 23, 2025

Save AF3 embeddings for existing datasets (for use in FFN)

Status: Open.

#29 In AltinLab/af3-linear-epitopes;

· ljwoods2 opened on Jul 11, 2025

Change RSA probe size to reflect real antibody chain

Status: Open.

#28 In AltinLab/af3-linear-epitopes;

· ljwoods2 opened on Jul 9, 2025

HV1 segmentation inference

Status: Open.

#27 In AltinLab/af3-linear-epitopes;

· ljwoods2 opened on Jul 9, 2025

Sanity check: reproducing BP3 scoring

Status: Open.

#26 In AltinLab/af3-linear-epitopes;

· ljwoods2 opened on Jul 7, 2025

30mer inference RMSD vs 30mer window in focal protein inference

Status: Open.

#25 In AltinLab/af3-linear-epitopes;

· ljwoods2 opened on Jul 3, 2025

Write a github action that runs all data cleaning scripts

Status: Open.

#23 In AltinLab/af3-linear-epitopes;

· ljwoods2 opened on Jul 2, 2025

Double-threshold HV1 in the same way as IN1

Status: Open.

#18 In AltinLab/af3-linear-epitopes;

· ljwoods2 opened on Jun 25, 2025

Stretch goal: Attempt to identify 30mers from focal proteins alone using segmentation

Status: Open.

#14 In AltinLab/af3-linear-epitopes;

· ljwoods2 opened on Jun 24, 2025

Stretch goal: modify bepipred 3.0 with structural information

Status: Open.

#13 In AltinLab/af3-linear-epitopes;

· ljwoods2 opened on Jun 24, 2025

Evaluate AF3 best methods on BP3C50ID (bepipred train/test set)

Status: Open.

#10 In AltinLab/af3-linear-epitopes;

· ljwoods2 opened on Jun 24, 2025