Error in lazy loading for reverse dependencies of qs2

[andrei-stoica26]

I get the following error for my Bioconductor packages which import or suggest qs2 (CSOA, GSABenchmark, hammers, scLang):

Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '/home/biocbuild/bbs-3.24-bioc/R/site-library/qs2/libs/qs2.so':
/home/biocbuild/bbs-3.24-bioc/R/site-library/qs2/libs/qs2.so: undefined symbol: _ZTIN3tbb4taskE
Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
ERROR: lazy loading failed for package ‘CSOA’

https://www.bioconductor.org/checkResults/3.24/bioc-LATEST/CSOA/nebbiolo2-install.html

Checking results on Bioconductor (https://www.bioconductor.org/checkResults/3.24/bioc-LATEST/), I found that other reverse dependencies of qs2 (ChromSCape, cTRAP, gDRimport, gDRutils, etc.) have the same issue. Could you please investigate and fix this?

[traversc]

Thanks for the report. The issue is not qs2 (you can see it's all green on the CRAN page), its due to a RcppParallel update which changed ABI. The only thing you need to do is reinstall qs2 from source.

[andrei-stoica26]

Thanks. The error is not on my side (presumably because my version of RcppParallel is older than the mentioned update), it's on the Bioconductor side. I have opened an issue on the RcppParallel repo.

[jwokaty]

Hi @traversc

The CRAN mac binaries have this problem and should be rebuilt.

[traversc]

Hi @jwokaty thanks for letting me know. CRAN is on vacation until the 19th so unfortunately I won't be able to get an update until then. Will do as soon as possible.

[pvanlaake]

I just had the same problem with CI/CD on GH.

Nothing more to add but now I can be sure to be notified of the good news on this thread that all's been solved, on the 19th presumably!

[igordot]

CRAN rebuilds packages when there is a new version. This would be a good excuse to push an update.