Issues

• Website rolling update mixes old and new pods per request: new pages get 404s for their CSS, JS and images

  bugdeploymentwebsite
  loculus-project/loculus#7485 · Filter by author corneliusroemer opened on Oct 2, 2026

• Upgrade website and integration tests to Typescript 7 when unblocked

  dependencieswebsite
  loculus-project/loculus#7470 · Filter by author tombch opened on Oct 1, 2026
  1

• Autocomplete combobox flickers on every open: list with zero counts → "Loading..." → list

  bugwebsite
  loculus-project/loculus#7445 · Filter by author corneliusroemer opened on Sep 28, 2026
  1

• Search combobox slow with 1000+ options: blocking for >1s on open/typing

  performancewebsite
  loculus-project/loculus#7444 · Filter by author corneliusroemer opened on Sep 28, 2026

• Ingest prepare_files is quadratic: every metadata record is looked up in the to_submit list, 15+ min for 200k SARS-CoV-2 submissions

  ingestperformance
  loculus-project/loculus#7443 · Filter by author corneliusroemer opened on Sep 28, 2026

• Global rate limit of number of new sequences/files that can be created/revised per day

  backendfeature
  loculus-project/loculus#7434 · Filter by author corneliusroemer opened on Sep 28, 2026
  1

• Host validation rejects valid hosts: NCBI synonyms like Accipiter gentilis are dropped from the taxonomy DB, and host values aren't whitespace-stripped

  bugpreprocessingtaxonomy-service
  loculus-project/loculus#7432 · Filter by author corneliusroemer-agent opened on Sep 27, 2026
  5

  

• Uploaded files can currently retain an attacker-controlled "Content-Type" in S3

  backendbug
  loculus-project/loculus#7425 · Filter by author corneliusroemer opened on Sep 27, 2026

• Move OIDC callback handling out of auth middleware

  authrefactoringwebsite
  loculus-project/loculus#7423 · Filter by author snehasaisneha opened on Sep 26, 2026
  

• Move website secrets to Astro’s server-only environment

  authconfigdeploymentwebsite
  loculus-project/loculus#7422 · Filter by author snehasaisneha opened on Sep 26, 2026
  

• Trim trailing/leading whitespace from group names at creation

  backend
  loculus-project/loculus#7421 · Filter by author theosanderson opened on Sep 25, 2026
  1

• Processed sequences button on review page overwhelming for mpox

  bugwebsite
  loculus-project/loculus#7408 · Filter by author theosanderson opened on Sep 24, 2026
  1

• Contrast of text on submission page

  accessibilitywebsite
  loculus-project/loculus#7405 · Filter by author theosanderson opened on Sep 24, 2026
  1

• raw-reads-processing: warnings when running tests

  preprocessing
  loculus-project/loculus#7395 · Filter by author anna-parker opened on Sep 23, 2026

• Raw reads: test deacon threshold stability with actual files

  e2epreprocessingraw-reads-validationtests
  loculus-project/loculus#7386 · Filter by author corneliusroemer opened on Sep 22, 2026

• Unable to x away warning that sequence is not revise/revocable

  bugwebsite
  loculus-project/loculus#7380 · Filter by author anna-parker opened on Sep 22, 2026

• Prepro crashes if enrich_with_nextclade throws an exception, leading to sequences crash looping

  backendbugpreprocessing
  loculus-project/loculus#7378 · Filter by author anna-parker opened on Sep 21, 2026

• Dropping sequence with identical fastaId on edit page sequence field without prior discard shows new file name but old sequence kept

  bugwebsite
  loculus-project/loculus#7377 · Filter by author corneliusroemer opened on Sep 21, 2026
  1

• Deacon failures caused by the submitted file are reported as "Internal Error", e.g. a gzip truncated after read 100k

  bugpreprocessingraw-reads-validation
  loculus-project/loculus#7373 · Filter by author corneliusroemer-agent opened on Sep 21, 2026
  1

• Raw reads validation error messages are unbounded: the RESULT: INVALID path quotes readtools verbatim

  bugpreprocessingraw-reads-validation
  loculus-project/loculus#7372 · Filter by author corneliusroemer-agent opened on Sep 21, 2026

• Support required and optional file categories in submission configuration

  backendwebsite
  loculus-project/loculus#7367 · Filter by author theosanderson-agent opened on Sep 21, 2026

• Group submission over time graph labels overflow with many organisms

  bugwebsite
  loculus-project/loculus#7357 · Filter by author corneliusroemer opened on Sep 18, 2026
  1

• Confusing errors when supplying invalid host taxon

  bugpreprocessingtaxonomy-servicewebsite
  loculus-project/loculus#7351 · Filter by author theosanderson opened on Sep 18, 2026
  1

• Info icon on single sequence page looks a bit like required fields

  website
  loculus-project/loculus#7350 · Filter by author theosanderson opened on Sep 18, 2026

• Show submissionid on review cards (and maybe submission time)

  featureproposed_for_closurewebsite
  loculus-project/loculus#7336 · Filter by author corneliusroemer opened on Sep 16, 2026
  3