diff --git a/.copier-answers.yml b/.copier-answers.yml index 704bf69..cca5442 100644 --- a/.copier-answers.yml +++ b/.copier-answers.yml @@ -1,5 +1,5 @@ # Changes here will be overwritten by Copier -_commit: v7.3.0-24-g169e035 +_commit: v8.5.0-4-gd5f8597 _src_path: gh:eccenca/cmem-plugin-template author_mail: cmempy-developer@eccenca.com author_name: eccenca GmbH diff --git a/.github/workflows/check.yml b/.github/workflows/check.yml index 68e675d..a8e4694 100644 --- a/.github/workflows/check.yml +++ b/.github/workflows/check.yml @@ -22,6 +22,13 @@ jobs: - name: Check out repository uses: actions/checkout@v5 + - name: Cache Trivy DB + id: cache-trivydb + uses: actions/cache@v4 + with: + path: .trivycache + key: ${{ runner.os }}-trivydb + - name: Install Task uses: arduino/setup-task@v2 @@ -38,10 +45,6 @@ jobs: virtualenvs-in-project: true installer-parallel: true - - name: Install dynamic versioning plugin - run: | - poetry self add "poetry-dynamic-versioning[plugin]" - - name: mypy run: | task check:mypy @@ -61,9 +64,13 @@ jobs: run: | task check:deptry - - name: safety + - name: trivy + env: + TRIVY_NO_PROGRESS: "true" + TRIVY_CACHE_DIR: ".trivycache/" + TRIVY_DISABLE_VEX_NOTICE: "true" run: | - task check:safety + task check:trivy - name: Publish Test Report in Action uses: mikepenz/action-junit-report@v4 diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml index a450b6d..94c9751 100644 --- a/.github/workflows/publish.yml +++ b/.github/workflows/publish.yml @@ -35,10 +35,6 @@ jobs: virtualenvs-in-project: true installer-parallel: true - - name: Install dynamic versioning plugin - run: | - poetry self add "poetry-dynamic-versioning[plugin]" - - name: Publish Package env: PYPI_TOKEN: ${{ secrets.PYPI_TOKEN }} diff --git a/.gitignore b/.gitignore index 59cfd3a..845210d 100644 --- a/.gitignore +++ b/.gitignore @@ -138,6 +138,9 @@ dmypy.json # Cython debug symbols cython_debug/ +# Claude code specifics +.claude/settings.local.json + # project build plan specific ignores version.py co diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index a73d652..a722d73 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -1,6 +1,6 @@ --- default: - image: docker-registry.eccenca.com/eccenca-python:v3.13.8 + image: docker-registry.eccenca.com/eccenca-python:v3.13.13 # all jobs can be interrupted in case a new commit is pushed interruptible: true before_script: @@ -60,17 +60,24 @@ deptry: script: - task check:deptry -safety: +trivy: stage: test + variables: + TRIVY_NO_PROGRESS: "true" + TRIVY_CACHE_DIR: ".trivycache/" + TRIVY_DISABLE_VEX_NOTICE: "true" script: - - task check:safety + - task check:trivy + cache: + paths: + - .trivycache/ build: stage: build needs: - mypy - pytest - - safety + - trivy - deptry script: - task build diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index d117733..590e7a8 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,4 +1,7 @@ --- +default_language_version: + python: python3.13 + repos: - repo: local hooks: @@ -36,3 +39,9 @@ repos: stages: [post-checkout, post-merge] always_run: true + - id: trivy + name: check:trivy + description: run trivy to scan for vulnerabilities + entry: task check:trivy + language: python + pass_filenames: false \ No newline at end of file diff --git a/.trivyignore b/.trivyignore new file mode 100644 index 0000000..53933f2 --- /dev/null +++ b/.trivyignore @@ -0,0 +1,4 @@ +# .trivyignore + +# ignore 51358 safety - dev dependency only +CVE-2022-39280 diff --git a/Taskfile.yaml b/Taskfile.yaml index 8071937..3682da5 100644 --- a/Taskfile.yaml +++ b/Taskfile.yaml @@ -44,36 +44,9 @@ tasks: cmds: - mkdir -p {{.DIST_DIR}}/coverage - poetry:check: - internal: true - platforms: [darwin, linux] - summary: | - Check poetry versioning plugin. Currently not under Windows - run: once - preconditions: - - sh: '[ -d .git ]' - msg: > - Your newly created project directory needs to be initialized - as a git repository. - - sh: '[[ {{.PDV_VERSION}} > {{.PDV_VERSION_MIN}} ]]' - msg: > - This project needs the poetry-dynamic-versioning - plugin > v{{.PDV_VERSION_MIN}}. - - You can install it with the following command: - poetry self add "poetry-dynamic-versioning[plugin]" - vars: - PDV_VERSION_MIN: 0.20 - PDV_VERSION: - sh: > - poetry self show --addons poetry-dynamic-versioning --tree - | head -1 | cut -d " " -f 2 | cut -d "." -f 1-2 - poetry:install: desc: Install dependencies managed by Poetry run: once - deps: - - poetry:check cmds: - poetry install @@ -112,7 +85,7 @@ tasks: - task: check:ruff - task: check:mypy - task: check:deptry - - task: check:safety + - task: check:trivy check:pytest: desc: Run unit and integration tests @@ -154,12 +127,17 @@ tasks: vars: JUNIT_FILE: ./{{.DIST_DIR}}/junit-mypy.xml - check:safety: - desc: Complain about vulnerabilities in dependencies + check:trivy: + desc: Scan for vulnerabilities using Trivy <<: *preparation cmds: - # ignore 51358 safety - dev dependency only - - poetry run safety check -i 51358 + - > + poetry run trivy fs + --include-dev-deps + --scanners vuln + --skip-files .poetry/plugins/poetry.lock + --exit-code 1 + . check:deptry: desc: Complain about unused or missing dependencies @@ -185,7 +163,7 @@ tasks: <<: *preparation deps: - clean - - poetry:check cmds: - poetry build + - poetry export --without=dev -f requirements.txt >dist/requirements.txt diff --git a/cmem_plugin_validation/validate_entities/task.py b/cmem_plugin_validation/validate_entities/task.py index 9b34fad..9661a14 100644 --- a/cmem_plugin_validation/validate_entities/task.py +++ b/cmem_plugin_validation/validate_entities/task.py @@ -7,12 +7,10 @@ from types import SimpleNamespace from typing import Any -from cmem.cmempy.workspace.projects.resources.resource import get_resource_response -from cmem.cmempy.workspace.tasks import get_task +from cmem_client.client import Client from cmem_plugin_base.dataintegration.context import ( ExecutionContext, ExecutionReport, - UserContext, ) from cmem_plugin_base.dataintegration.description import Icon, Plugin, PluginParameter from cmem_plugin_base.dataintegration.entity import Entities @@ -24,11 +22,6 @@ FlexibleNumberOfInputs, UnknownSchemaPort, ) -from cmem_plugin_base.dataintegration.utils import ( - setup_cmempy_user_access, - split_task_id, - write_to_dataset, -) from cmem_plugin_base.dataintegration.utils.entity_builder import build_entities_from_data from jsonschema import validate from jsonschema.exceptions import ValidationError @@ -77,13 +70,6 @@ DEFAULT_FAIL_ON_VIOLATION = False - -def get_task_metadata(project: str, task: str, context: UserContext) -> dict: - """Get metadata information of a task""" - setup_cmempy_user_access(context=context) - return dict(get_task(project=project, task=task)) - - SOURCE = SimpleNamespace() SOURCE.entities = "entities" SOURCE.dataset = "dataset" @@ -172,7 +158,7 @@ class ValidateEntity(WorkflowPlugin): inputs: Sequence[Entities] execution_context: ExecutionContext - def __init__( # noqa: PLR0913 + def __init__( # noqa: PLR0913 PLR0917 self, source_mode: str, target_mode: str, @@ -297,10 +283,10 @@ def execute( ) ) if self.target_mode == TARGET.dataset: - write_to_dataset( - dataset_id=f"{context.task.project_id()}:{self.target_dataset}", - file_resource=io.StringIO(json.dumps(valid_json_objects)), - context=context.user, + Client.from_context(context=context).datasets.post_file_resource( + project_id=context.task.project_id(), + dataset_id=self.target_dataset, + file_resource=io.BytesIO(json.dumps(valid_json_objects).encode("utf-8")), ) return None @@ -319,16 +305,18 @@ def _validate_json(self, json: dict, schema: dict) -> bool: @staticmethod def _get_json_dataset_content(context: ExecutionContext, dataset: str) -> dict | list[dict]: """Get json dataset content""" - dataset_id = f"{context.task.project_id()}:{dataset}" - project_id, task_id = split_task_id(dataset_id) - task_meta_data = get_task_metadata(project_id, task_id, context.user) - resource_name = str(task_meta_data["data"]["parameters"]["file"]["value"]) - response = get_resource_response(project_id, resource_name) - return response.json() # type: ignore[no-any-return] + client = Client.from_context(context=context) + project_id = context.task.project_id() + resource_name = str( + client.datasets.get_item(project_id=project_id, dataset_id=dataset).data.parameters[ + "file" + ] + ) + return json.loads(client.files.read(f"{project_id}:{resource_name}")) # type: ignore[no-any-return] def _convert_entities_to_json( self, inputs: Sequence[Entities], path_to_entities: dict[str, Entities], path: str = "" - ) -> Generator[dict[str, Any], None, None]: + ) -> Generator[dict[str, Any]]: """Convert a sequence of Entities into JSON-like dictionaries using recursive traversal.""" for entities in inputs: # Initialize path-to-entities map for the root level diff --git a/cmem_plugin_validation/validate_graph/state.py b/cmem_plugin_validation/validate_graph/state.py index 5fd3fb3..f724062 100644 --- a/cmem_plugin_validation/validate_graph/state.py +++ b/cmem_plugin_validation/validate_graph/state.py @@ -1,11 +1,12 @@ """Graph validation process state""" -from cmem.cmempy.dp.shacl import validation +from cmem_client.client import Client class State: """State of a validation process""" + client: Client id_: str data: dict status: str @@ -14,15 +15,17 @@ class State: with_violations: int violations: int - def __init__(self, id_: str): + def __init__(self, client: Client, id_: str): + self.client = client self.id_ = id_ self.refresh() def refresh(self) -> None: """Refresh state of validation process""" - self.data = validation.get_aggregation(batch_id=self.id_) - self.status = self.data.get("state", "UNKNOWN") - self.completed = self.data.get("resourceProcessedCount", 0) - self.total = self.data.get("resourceCount", 0) - self.with_violations = self.data.get("resourcesWithViolationsCount", 0) - self.violations = self.data.get("violationsCount", 0) + aggregation = self.client.validations.get_aggregation(batch_id=self.id_) + self.data = aggregation.model_dump(by_alias=True, exclude_none=True) + self.status = aggregation.state + self.completed = aggregation.resource_processed_count + self.total = aggregation.resource_count + self.with_violations = aggregation.resources_with_violations_count + self.violations = aggregation.violations_count diff --git a/cmem_plugin_validation/validate_graph/task.py b/cmem_plugin_validation/validate_graph/task.py index f2352f9..40fd2e4 100644 --- a/cmem_plugin_validation/validate_graph/task.py +++ b/cmem_plugin_validation/validate_graph/task.py @@ -4,9 +4,9 @@ from collections.abc import Sequence from time import sleep -from cmem.cmempy.dp.proxy import graph as graph_api -from cmem.cmempy.dp.shacl import validation -from cmem.cmempy.queries import SparqlQuery +from cmem_client.client import Client +from cmem_client.models.query_catalog import Query +from cmem_client.models.validation import STATUS_RUNNING, STATUS_SCHEDULED, ValidationViolation from cmem_plugin_base.dataintegration.context import ExecutionContext, ExecutionReport from cmem_plugin_base.dataintegration.description import Icon, Plugin, PluginParameter from cmem_plugin_base.dataintegration.entity import ( @@ -21,9 +21,8 @@ FixedNumberOfInputs, FixedSchemaPort, ) -from cmem_plugin_base.dataintegration.utils import setup_cmempy_user_access from cmem_plugin_base.dataintegration.utils.entity_builder import build_entities_from_data -from requests import HTTPError +from httpx import HTTPStatusError from cmem_plugin_validation.validate_graph.state import State @@ -111,7 +110,7 @@ class ValidateGraph(WorkflowPlugin): """Validate resources in a graph""" - def __init__( # noqa: PLR0913 + def __init__( # noqa: PLR0913 PLR0917 self, context_graph: str, shape_graph: str = DEFAULT_SHAPE_GRAPH, @@ -156,33 +155,29 @@ def execute( ) -> Entities | None: """Run the workflow operator.""" self.log.info("Start validation task.") - setup_cmempy_user_access(context=context.user) + client = Client.from_context(context=context) if self.clear_result_graph and self.result_graph: - graph_api.delete(graph=self.result_graph) - query = SparqlQuery(text=self.sparql_query).get_filled_text( - placeholder={"context_graph": self.context_graph} + client.graphs.delete_item(key=self.result_graph, skip_if_missing=True) + query = Query(text=self.sparql_query).fill_placeholders( + placeholders={"context_graph": self.context_graph} ) try: - process_id = validation.start( + process_id = client.validations.start( context_graph=self.context_graph, shape_graph=self.shape_graph, - result_graph=self.result_graph if self.result_graph else None, + result_graph=self.result_graph or None, query=query, ) - except HTTPError as error: - context.report.update( - ExecutionReport( - error=json.loads(error.response.text)["detail"], - ) - ) - raise RuntimeError(json.loads(error.response.text)["detail"]) from error - state = State(id_=process_id) + except HTTPStatusError as error: + detail = json.loads(error.response.text)["detail"] + context.report.update(ExecutionReport(error=detail)) + raise RuntimeError(detail) from error + state = State(client=client, id_=process_id) while True: sleep(1) - setup_cmempy_user_access(context=context.user) state.refresh() if context.workflow and context.workflow.status() != "Running": - validation.cancel(batch_id=process_id) + client.validations.cancel(batch_id=process_id) context.report.update( ExecutionReport( entity_count=state.completed, @@ -192,7 +187,7 @@ def execute( ) self.log.info("End validation task (Cancelled Workflow).") return None - if state.status in (validation.STATUS_SCHEDULED, validation.STATUS_RUNNING): + if state.status in (STATUS_SCHEDULED, STATUS_RUNNING): # when reported as running or scheduled, start another loop context.report.update( ExecutionReport( @@ -224,11 +219,22 @@ def execute( if not self.output_results: return None - violations = [] - for result in list(validation.get(batch_id=process_id)["results"]): - resource_iri = result.get("resourceIri") - for _ in result["violations"]: - violation = dict(_) - violation["resourceIri"] = resource_iri - violations.append(violation) + violations = [ + self._as_violation_data(violation, resource_iri=result.resource_iri) + for result in client.validations.get_result(batch_id=process_id).results + for violation in result.violations + ] return build_entities_from_data(data=violations) + + def _as_violation_data(self, violation: ValidationViolation, resource_iri: str) -> dict: + """Turn a violation into a plain dict ordered like the output schema + + The entity paths of the returned entities are derived from the key order of these + dicts, so the keys of the output schema come first, followed by any additional key + the API delivers and the IRI of the validated resource. + """ + data: dict = violation.model_dump(by_alias=True, exclude_none=True) + ordered: dict = { + _.path: data.pop(_.path) for _ in self.output_schema.paths if _.path in data + } + return ordered | data | {"resourceIri": resource_iri} diff --git a/poetry.lock b/poetry.lock index c1db5d0..7581d29 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,43 +1,128 @@ -# This file is automatically @generated by Poetry 2.2.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.3.3 and should not be changed by hand. 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"sha256:3c01d1b758ed4ace150ac960ac0bd13ce4542b9e2cdf01312dcda5012cfebabe"}, + {file = "xdg_base_dirs-6.0.2.tar.gz", hash = "sha256:950504e14d27cf3c9cb37744680a43bf0ac42efefc4ef4acf98dc736cab2bced"}, ] [metadata] lock-version = "2.1" python-versions = "^3.13" -content-hash = "af44248cec729030081a809e1b2e55c3760bc9a867f590edc9a112c901a033fa" +content-hash = "c8510d9297dcf5eaa563b07622fffc4475f397ae217159d10d326e4ab3bfd424" diff --git a/pyproject.toml b/pyproject.toml index 609012a..b865ad8 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -13,32 +13,36 @@ keywords = [ ] homepage = "https://github.com/eccenca/cmem-plugin-validation" +[tool.poetry.requires-plugins] +poetry-plugin-export = "^1.10.0" +poetry-plugin-shell = "^1.0.1" +poetry-dynamic-versioning = "^1.10.0" + [tool.poetry.dependencies]# if you need to change python version here, change it also in .python-version python = "^3.13" jsonschema = "^4.25.1" -cmem-cmempy = ">=25.3.0" -requests = ">=2.0.1" +cmem-client = "^1.0.0" +httpx = "^0.27.0" [tool.poetry.dependencies.cmem-plugin-base] -version = "^4.15.0" +version = "^4.19.0" allow-prereleases = false [tool.poetry.group.dev.dependencies.cmem-cmemc] version = ">=24.2.0" [tool.poetry.group.dev.dependencies] -deptry = "^0.23.1" -genbadge = {extras = ["coverage"], version = "^1.1.2"} -mypy = "^1.18.2" -pip = "^25.2" -pytest = "^8.4.2" -pytest-cov = "^7.0.0" +deptry = "^0.25.1" +genbadge = {extras = ["coverage"], version = "^1.1.3"} +mypy = "^2.3.0" +pip = "^26" +pytest = "^9.1.1" +pytest-cov = "^7.1.0" pytest-dotenv = "^0.5.2" -pytest-html = "^4.1.1" -pytest-memray = { version = "^1.8.0", markers = "platform_system != 'Windows'" } -ruff = "^0.13.3" -safety = "^1.10.3" -types-requests = "^2.31.0.20240406" +pytest-html = "^4.2.0" +pytest-memray = { version = "^1.10.0", markers = "platform_system != 'Windows'" } +ruff = "^0.16.2" +trivy-py-ecc = "^0.73.0.1" [build-system] requires = ["poetry-core>=1.0.0", "poetry-dynamic-versioning"] @@ -71,7 +75,7 @@ exclude_also = [ [tool.ruff] line-length = 100 -target-version = "py311" +target-version = "py313" [tool.ruff.format] line-ending = "lf" # Use `\n` line endings for all files @@ -95,4 +99,5 @@ ignore = [ "PD", # opinionated linting for pandas code "S101", # use of assert detected "TRY003", # Avoid specifying long messages outside the exception class + "CPY001", # Missing copyright notice ] diff --git a/tests/test_validate_entities.py b/tests/test_validate_entities.py index d6d858f..0be8d08 100644 --- a/tests/test_validate_entities.py +++ b/tests/test_validate_entities.py @@ -7,9 +7,10 @@ from pathlib import Path import pytest -from cmem.cmempy.workspace.projects.datasets.dataset import make_new_dataset -from cmem.cmempy.workspace.projects.project import delete_project, make_new_project -from cmem.cmempy.workspace.projects.resources.resource import create_resource, get_resource_response +from cmem_client.client import Client +from cmem_client.models.dataset import Dataset, DatasetData, DatasetMetadata +from cmem_client.models.project import Project +from cmem_client.repositories.protocols.import_item import ImportConflictPolicy from cmem_plugin_base.testing import TestExecutionContext from cmem_plugin_validation.validate_entities.task import SOURCE, TARGET, ValidateEntity @@ -32,41 +33,48 @@ class TestSetup: valid_source_object_count = 2 -def _make_dataset(project_name: str, dataset_name: str, dataset_file_name: Path) -> None: - """Create new dataset in project""" - make_new_dataset( - project_name=project_name, - dataset_name=dataset_name, - dataset_type="json", - parameters={"file": str(dataset_file_name)}, - autoconfigure=False, - ) - with dataset_file_name.open("rb") as response_file: - create_resource( - project_name=project_name, - resource_name=str(dataset_file_name), - file_resource=response_file, - replace=True, +def get_client(project_name: str) -> Client: + """Get a fresh client + + Clients are created per operation on purpose: a client keeps its HTTP connections + alive in a pool, and a connection which idles while a test runs is closed by the + server before it is used again. + """ + return Client.from_context(context=TestExecutionContext(project_id=project_name)) + + +def _make_dataset(client: Client, project_name: str, dataset_name: str, file_name: str) -> None: + """Create a new JSON dataset in a project""" + client.datasets.create_item( + Dataset( + id=dataset_name, + project=project_name, + data=DatasetData(type="json", parameters={"file": file_name}), + metadata=DatasetMetadata(label=dataset_name), ) + ) @pytest.fixture -def project() -> Generator[TestSetup, None, None]: +def project() -> Generator[TestSetup]: """Provide the DI build project incl. assets.""" _ = TestSetup() - make_new_project(_.project_name) - make_new_dataset( - project_name=_.project_name, - dataset_name=_.target_dataset, - dataset_type="json", - parameters={"file": _.target_dataset_file}, - autoconfigure=False, - ) - _make_dataset(_.project_name, _.valid_source_dataset, _.valid_source_dataset_file) - _make_dataset(_.project_name, _.invalid_source_dataset, _.invalid_source_dataset_file) - _make_dataset(_.project_name, _.schema_dataset, _.schema_dataset_file) + client = get_client(_.project_name) + client.projects.create_item(Project(name=_.project_name)) + _make_dataset(client, _.project_name, _.target_dataset, _.target_dataset_file) + for dataset_name, dataset_file in ( + (_.valid_source_dataset, _.valid_source_dataset_file), + (_.invalid_source_dataset, _.invalid_source_dataset_file), + (_.schema_dataset, _.schema_dataset_file), + ): + _make_dataset(client, _.project_name, dataset_name, dataset_file.name) + client.files.import_item( + path=dataset_file, + key=f"{_.project_name}:{dataset_file.name}", + on_conflict=ImportConflictPolicy.REPLACE, + ) yield _ - delete_project(_.project_name) + get_client(_.project_name).projects.delete_item(_.project_name) needs_cmem = pytest.mark.skipif( @@ -140,6 +148,6 @@ def validate_test_source_target_dataset(project: TestSetup) -> None: target_dataset=_.target_dataset, ).execute([], TestExecutionContext(project_id=_.project_name)) - with get_resource_response(_.project_name, _.target_dataset_file) as response: - data = json.loads(response.content) - assert len(data) == _.valid_source_object_count + client = get_client(_.project_name) + data = json.loads(client.files.read(f"{_.project_name}:{_.target_dataset_file}")) + assert len(data) == _.valid_source_object_count diff --git a/tests/test_validate_graph.py b/tests/test_validate_graph.py index 6dc38cd..89d8419 100644 --- a/tests/test_validate_graph.py +++ b/tests/test_validate_graph.py @@ -3,23 +3,50 @@ from collections.abc import Generator from dataclasses import dataclass from os import environ +from pathlib import Path +from tempfile import TemporaryDirectory from types import NoneType from typing import Any -import cmem.cmempy.dp.proxy.graph as graph_api import pytest +from cmem_client.client import Client +from cmem_client.repositories.graphs import GraphExportConfig, GraphsRepository +from cmem_client.repositories.protocols.import_item import ImportConflictPolicy from cmem_plugin_base.dataintegration.entity import Entities from cmem_plugin_base.testing import TestExecutionContext -from requests import HTTPError, codes from cmem_plugin_validation.validate_graph.task import ValidateGraph from tests.fixtures import FIXTURE_DIR +N_TRIPLES = GraphExportConfig(serialization=GraphsRepository.formats["n-triples"]) + + +def get_client() -> Client: + """Get a fresh client + + Clients are created per operation on purpose: a client keeps its HTTP connections + alive in a pool, and a connection which idles while a validation process runs is + closed by the server before it is used again. + """ + return Client.from_context(context=TestExecutionContext()) + def _get_triple_count(graph: str) -> int: - """Fetch a graph as n-triples and count the lines""" - lines = graph_api.get(graph=graph, accept="application/n-triples").text.splitlines() - return len(lines) + """Export a graph as n-triples and count the lines""" + client = get_client() + if graph not in client.graphs: + return 0 + with TemporaryDirectory() as temp_dir: + path = Path(temp_dir) / "graph.nt" + client.graphs.export_item(key=graph, path=path, replace=True, configuration=N_TRIPLES) + return len(path.read_text(encoding="utf-8").splitlines()) + + +def _delete_graphs(*graphs: str) -> None: + """Delete graphs, ignoring the ones which are not there""" + client = get_client() + for graph in graphs: + client.graphs.delete_item(key=graph, skip_if_missing=True) @dataclass @@ -36,26 +63,18 @@ class TestSetup: @pytest.fixture -def test_setup() -> Generator[TestSetup, Any, None]: +def test_setup() -> Generator[TestSetup, Any]: """Provide Test Setup""" if environ.get("CMEM_BASE_URI", "") == "": pytest.skip("Needs CMEM configuration") _ = TestSetup() - graph_api.post_streamed(replace=True, file=_.persons_file, graph=_.persons_graph) - graph_api.post_streamed(replace=True, file=_.shapes_file, graph=_.shapes_graph) - try: - graph_api.delete(graph=_.result_graph) - except HTTPError as error: - if error.response.status_code != codes.not_found: - raise HTTPError from error + client = get_client() + for graph, file in ((_.persons_graph, _.persons_file), (_.shapes_graph, _.shapes_file)): + client.graphs.import_item(path=file, key=graph, on_conflict=ImportConflictPolicy.REPLACE) + client.graphs.delete_item(key=_.result_graph, skip_if_missing=True) yield _ # purge setup - for graph in [_.persons_graph, _.shapes_graph, _.result_graph]: - try: - graph_api.delete(graph=graph) - except HTTPError as error: - if error.response.status_code != codes.not_found: - raise HTTPError from error + _delete_graphs(_.persons_graph, _.shapes_graph, _.result_graph) def test_fails(test_setup: TestSetup) -> None: