diff --git a/packages/aws-cdk/lib/commands/migrate.ts b/packages/aws-cdk/lib/commands/migrate.ts
index e9d9d914d..b5cfea6f6 100644
--- a/packages/aws-cdk/lib/commands/migrate.ts
+++ b/packages/aws-cdk/lib/commands/migrate.ts
@@ -658,11 +658,13 @@ function deduplicateResources(resources: ResourceDetail[]) {
   let uniqueResources: { [key: string]: ResourceDetail } = {};
 
   for (const resource of resources) {
-    const key = Object.keys(resource.ResourceIdentifier!)[0];
-
-    // Creating our unique identifier using the resource type, the key, and the value of the resource identifier
-    // The resource identifier is a combination of a key value pair defined by a resource's schema, and the resource type of the resource.
-    const uniqueIdentifer = `${resource.ResourceType}:${key}:${resource.ResourceIdentifier![key]}`;
+    // Creating our unique identifier using the resource type and the full resource identifier.
+    // The resource identifier can be made up of more than one key/value pair (e.g. a resource
+    // like AWS::Route53::KeySigningKey is identified by the pair HostedZoneId + Name), so every
+    // key must be included -- using only the first key would incorrectly collapse distinct
+    // resources that merely share the value of their first identifier component.
+    const sortedIdentifierEntries = Object.entries(resource.ResourceIdentifier!).sort(([a], [b]) => a.localeCompare(b));
+    const uniqueIdentifer = `${resource.ResourceType}:${sortedIdentifierEntries.map(([k, v]) => `${k}=${v}`).join(',')}`;
     uniqueResources[uniqueIdentifer] = resource;
   }
 
diff --git a/packages/aws-cdk/test/commands/migrate.test.ts b/packages/aws-cdk/test/commands/migrate.test.ts
index dfe9707d7..2010e4ae4 100644
--- a/packages/aws-cdk/test/commands/migrate.test.ts
+++ b/packages/aws-cdk/test/commands/migrate.test.ts
@@ -596,4 +596,52 @@ describe('generateTemplate', () => {
     const template = await generateTemplate(opts);
     expect(template).toEqual(defaultExpectedResult);
   });
+
+  test('generateTemplate does not drop distinct resources that share the first key of a compound ResourceIdentifier', async () => {
+    // AWS::Route53::KeySigningKey (among other resource types) is uniquely identified by a *pair*
+    // of keys: HostedZoneId + Name. Two distinct resources sharing the same HostedZoneId but a
+    // different Name must both be retained by deduplication.
+    const compoundResourceA = {
+      ResourceType: 'AWS::Route53::KeySigningKey',
+      ManagedByStack: false,
+      ResourceIdentifier: { HostedZoneId: 'Z1', Name: 'ksk-one' },
+      LogicalResourceId: 'ksk-one',
+    };
+    const compoundResourceB = {
+      ResourceType: 'AWS::Route53::KeySigningKey',
+      ManagedByStack: false,
+      ResourceIdentifier: { HostedZoneId: 'Z1', Name: 'ksk-two' },
+      LogicalResourceId: 'ksk-two',
+    };
+
+    mockCloudFormationClient
+      .on(ListResourceScanResourcesCommand)
+      .resolves({
+        Resources: [compoundResourceA, compoundResourceB],
+      });
+
+    const opts: GenerateTemplateOptions = {
+      ioHelper,
+      stackName: stackName,
+      filters: [],
+      fromScan: FromScan.NEW,
+      sdkProvider: sdkProvider,
+      environment: environment,
+    };
+
+    await generateTemplate(opts);
+
+    // Both resources must survive deduplication -- they only share the leading identifier key
+    // (HostedZoneId), not the full compound identifier (HostedZoneId + Name) -- and so both
+    // must be sent along to CreateGeneratedTemplate.
+    const createCalls = mockCloudFormationClient.commandCalls(CreateGeneratedTemplateCommand);
+    expect(createCalls).toHaveLength(1);
+    const sentResources = createCalls[0].args[0].input.Resources;
+    expect(sentResources).toContainEqual(
+      expect.objectContaining({ ResourceIdentifier: { HostedZoneId: 'Z1', Name: 'ksk-one' } }),
+    );
+    expect(sentResources).toContainEqual(
+      expect.objectContaining({ ResourceIdentifier: { HostedZoneId: 'Z1', Name: 'ksk-two' } }),
+    );
+  });
 });