diff --git a/modules/core/src/main/java/org/apache/ignite/internal/processors/cache/persistence/filename/FileTreeUtils.java b/modules/core/src/main/java/org/apache/ignite/internal/processors/cache/persistence/filename/FileTreeUtils.java
index 7d1dd7d7f05d3..e6406cbb560d4 100644
--- a/modules/core/src/main/java/org/apache/ignite/internal/processors/cache/persistence/filename/FileTreeUtils.java
+++ b/modules/core/src/main/java/org/apache/ignite/internal/processors/cache/persistence/filename/FileTreeUtils.java
@@ -19,6 +19,7 @@
 
 import java.io.File;
 import java.io.IOException;
+import java.nio.file.NoSuchFileException;
 import java.util.HashSet;
 import java.util.Map;
 import java.util.Set;
@@ -63,10 +64,15 @@ public static void createCacheStorages(NodeFileTree ft, IgniteLogger log) throws
     public static void removeTmpSnapshotFiles(SnapshotFileTree sft, boolean err, IgniteLogger log) {
         NodeFileTree tmpFt = sft.tempFileTree();
 
-        removeTmpDir(tmpFt.root(), err, log);
+        U.delete(tmpFt.nodeStorage());
 
-        for (File tmpDrStorage : tmpFt.extraStorages().values())
-            removeTmpDir(tmpDrStorage.getParentFile(), err, log);
+        for (File tmpDrStorage : tmpFt.extraStorages().values()) {
+            U.delete(tmpDrStorage);
+
+            deleteSnapshotTempRoot(tmpDrStorage.getParentFile(), err, log);
+        }
+
+        deleteSnapshotTempRoot(tmpFt.root(), err, log);
     }
 
     /**
@@ -104,20 +110,20 @@ public static Set<String> nodeStorages(DataStorageConfiguration dsCfg) throws Ig
     }
 
     /**
-     * @param dir Directory to remove
-     * @param err If {@code true} then operation ends with error.
+     * @param root Snapshot temporary root.
+     * @param err {@code True} if snapshot processing finished with an error.
      * @param log Logger.
      */
-    private static void removeTmpDir(File dir, boolean err, IgniteLogger log) {
-        U.delete(dir);
-
-        // Delete snapshot directory if no other files exists.
+    private static void deleteSnapshotTempRoot(File root, boolean err, IgniteLogger log) {
         try {
-            if (U.fileCount(dir.toPath()) == 0 || err)
-                U.delete(dir.toPath());
+            if (err || U.fileCount(root.toPath()) == 0)
+                U.delete(root.toPath());
+        }
+        catch (NoSuchFileException ignored) {
+            // Snapshot temporary root has already been removed.
         }
         catch (IOException e) {
-            log.error("Snapshot directory doesn't exist [snpName=" + dir.getName() + ", dir=" + dir.getParentFile() + ']');
+            log.error("Failed to clean up snapshot temporary root [dir=" + root + ']', e);
         }
     }
 
diff --git a/modules/core/src/test/java/org/apache/ignite/internal/processors/cache/persistence/snapshot/IgniteSnapshotManagerSelfTest.java b/modules/core/src/test/java/org/apache/ignite/internal/processors/cache/persistence/snapshot/IgniteSnapshotManagerSelfTest.java
index f3edd6df687da..265942fd7fc48 100644
--- a/modules/core/src/test/java/org/apache/ignite/internal/processors/cache/persistence/snapshot/IgniteSnapshotManagerSelfTest.java
+++ b/modules/core/src/test/java/org/apache/ignite/internal/processors/cache/persistence/snapshot/IgniteSnapshotManagerSelfTest.java
@@ -59,6 +59,8 @@
 import org.apache.ignite.internal.processors.cache.persistence.file.FilePageStoreManager;
 import org.apache.ignite.internal.processors.cache.persistence.file.FileVersionCheckingFactory;
 import org.apache.ignite.internal.processors.cache.persistence.file.RandomAccessFileIOFactory;
+import org.apache.ignite.internal.processors.cache.persistence.filename.FileTreeUtils;
+import org.apache.ignite.internal.processors.cache.persistence.filename.NodeFileTree;
 import org.apache.ignite.internal.processors.cache.persistence.filename.SnapshotFileTree;
 import org.apache.ignite.internal.processors.cache.persistence.partstate.GroupPartitionId;
 import org.apache.ignite.internal.util.GridCloseableIteratorAdapter;
@@ -647,6 +649,70 @@ public void testFullSnapshotCreationLog() throws Exception {
         assertFalse(noMatchParams.check());
     }
 
+    /**
+     * Tests that snapshot temporary root is not removed on successful cleanup if it still contains files after
+     * node-specific storage has been removed.
+     */
+    @Test
+    public void testSnapshotTmpRootIsNotRemovedIfNotEmptyOnSuccess() throws Exception {
+        IgniteEx ignite = startGridWithCache(dfltCacheCfg, CACHE_KEYS_RANGE);
+
+        SnapshotFileTree sft = snapshotFileTree(ignite, SNAPSHOT_NAME);
+
+        NodeFileTree tmpFt = sft.tempFileTree();
+
+        File root = tmpFt.root();
+        File nodeStorage = tmpFt.nodeStorage();
+
+        assertTrue(nodeStorage.mkdirs());
+
+        File extraFile = new File(root, "unexpected-tmp-file");
+
+        assertTrue(extraFile.createNewFile());
+
+        try {
+            FileTreeUtils.removeTmpSnapshotFiles(sft, false, log);
+
+            assertFalse("Node-specific temporary storage must be removed: " + nodeStorage, nodeStorage.exists());
+
+            assertTrue("Snapshot temporary root must not be removed if it is not empty: " + root, root.exists());
+
+            assertTrue("Unexpected temporary file must not be removed on successful cleanup: " + extraFile,
+                extraFile.exists());
+        }
+        finally {
+            U.delete(root);
+        }
+    }
+
+    /**
+     * Tests that snapshot temporary root is removed on cleanup after an error even if it still contains files after
+     * node-specific storage has been removed.
+     */
+    @Test
+    public void testSnapshotTmpRootIsRemovedIfNotEmptyOnError() throws Exception {
+        IgniteEx ignite = startGridWithCache(dfltCacheCfg, CACHE_KEYS_RANGE);
+
+        SnapshotFileTree sft = snapshotFileTree(ignite, SNAPSHOT_NAME);
+
+        NodeFileTree tmpFt = sft.tempFileTree();
+
+        File root = tmpFt.root();
+        File nodeStorage = tmpFt.nodeStorage();
+
+        assertTrue(nodeStorage.mkdirs());
+
+        File extraFile = new File(root, "unexpected-tmp-file");
+
+        assertTrue(extraFile.createNewFile());
+
+        FileTreeUtils.removeTmpSnapshotFiles(sft, true, log);
+
+        assertFalse("Node-specific temporary storage must be removed: " + nodeStorage, nodeStorage.exists());
+
+        assertFalse("Snapshot temporary root must be removed on error: " + root, root.exists());
+    }
+
     /**
      * @param ignite Ignite instance to set factory.
      * @param factory New factory to use.