[Bug]: SciPy quick-start config is missing in a clean PyPI install

[ilyuka]

Result first

Hi,

I installed PhaseProbe 0.2.0 from PyPI in a clean Python 3.12 environment and tried the SciPy quick-start command:

phaseprobe perturb --config examples/scipy/lorenz.json

The command fails because examples/scipy/lorenz.json is not present in the working directory after a normal PyPI installation:

INVALID INPUT: cannot read configuration examples/scipy/lorenz.json: [Errno 2] No such file or directory: 'examples/scipy/lorenz.json'

RC=2

I expected the documented SciPy quick-start command to be runnable from a clean PyPI installation, or for the documentation to state that the example config requires a source checkout.

Minimal reproduction

python3 -m venv .venv
source .venv/bin/activate

python -m pip install --upgrade pip
python -m pip install "phaseprobe[scipy]==0.2.0"

test -f examples/scipy/lorenz.json
&& echo "SCIPY_CONFIG_PRESENT=YES"
|| echo "SCIPY_CONFIG_PRESENT=NO"

phaseprobe perturb --config examples/scipy/lorenz.json
echo "RC=$?"

Observed output:

SCIPY_CONFIG_PRESENT=NO
INVALID INPUT: cannot read configuration examples/scipy/lorenz.json: [Errno 2] No such file or directory: 'examples/scipy/lorenz.json'
RC=2

PhaseProbe and Python versions

PhaseProbe 0.2.0 Python 3.12.3

Operating system

Linux

Safety

• I removed credentials, private model data, and personal information.