diff --git a/source/python-api/api-reference/fold.rst b/source/python-api/api-reference/fold.rst index 2908c47..3eeaecc 100644 --- a/source/python-api/api-reference/fold.rst +++ b/source/python-api/api-reference/fold.rst @@ -13,9 +13,15 @@ Interface :undoc-members: -Models +Models ------ +.. autoclass:: openprotein.fold.OpenDDEModel + :members: + +.. autoclass:: openprotein.fold.OpenDDEAbagModel + :members: + .. autoclass:: openprotein.fold.ProtenixModel :members: @@ -49,6 +55,9 @@ Models Results ------- +.. autoclass:: openprotein.fold.OpenDDEConfidence + :members: + .. autoclass:: openprotein.fold.ESMFold2Confidence :members: diff --git a/source/rest-api/fold.rst b/source/rest-api/fold.rst index bf55ddc..797e749 100644 --- a/source/rest-api/fold.rst +++ b/source/rest-api/fold.rst @@ -11,6 +11,7 @@ Currently, we support the following models: - **AlphaFold2**: Open-sourced Alphafold 2 implementation using ColabFold. `GitHub link `__, `Reference `__. Licensed under `MIT `__. - **Boltz-2, Boltz-1x, Boltz-1**: Open-source Boltz models. `GitHub link `__, `Boltz-1 reference `__, `Boltz-2 `__. Licensed under `MIT `__. - **Protenix**: Open-source Protenix model. `GitHub link `_, `Reference `_. Licensed under `Apache-2.0 `_. +- **OpenDDE, OpenDDE-abag**: Open-source OpenDDE all-atom co-folding models, predicting protein, DNA, RNA, ligand and ion complexes in a single structure. ``opendde-abag`` is tuned on antibody-antigen complexes. `GitHub link `__, `Reference `__. Licensed under `Apache-2.0 `__. - **RosettaFold-3**: Open-source RosettaFold-3 model. `GitHub link `__, `Reference `__. Licensed under `BSD-3 `__. Endpoints