diff --git a/i14/templates/xrf-tomo-template.yaml b/i14/templates/xrf-tomo-template.yaml index 5c26d3e..45a63eb 100644 --- a/i14/templates/xrf-tomo-template.yaml +++ b/i14/templates/xrf-tomo-template.yaml @@ -219,6 +219,8 @@ spec: --prepare-only python -m jupyter nbconvert --to html --execute --output align_initial --output-dir $OUTPUT/_assets --embed-images $OUTPUT/align_initial.ipynb + cp -r $OUTPUT/_assets/* /tmp/ + volumeMounts: - name: session mountPath: "{{`{{ workflow.parameters.prefix }}`}}/{{`{{ workflow.parameters.visitdir }}`}}" @@ -231,11 +233,11 @@ spec: path: "{{`{{ workflow.parameters.prefix }}`}}/{{`{{ workflow.parameters.visitdir }}`}}/processing/workflows/{{`{{ workflow.parameters.outputFolder }}`}}/{{`{{ workflow.parameters.elementToAlign }}`}}-{{`{{ workflow.parameters.transitionToAlign }}`}}_cor.txt" artifacts: - name: align_initial - path: "{{`{{ workflow.parameters.prefix }}`}}/{{`{{ workflow.parameters.visitdir }}`}}/processing/workflows/{{`{{ workflow.parameters.outputFolder }}`}}/_assets/align_initial.html" + path: "/tmp/align_initial.html" archive: none: {} - name: aligned_stack - path: "{{`{{ workflow.parameters.prefix }}`}}/{{`{{ workflow.parameters.visitdir }}`}}/processing/workflows/{{`{{ workflow.parameters.outputFolder }}`}}/_assets/align_stack.gif" + path: "/tmp/align_stack.gif" archive: none: {} podSpecPatch: |