diff --git a/.github/workflows/_frontend_code.yml b/.github/workflows/_frontend_code.yml index 462b7021..e4ee79ea 100644 --- a/.github/workflows/_frontend_code.yml +++ b/.github/workflows/_frontend_code.yml @@ -9,7 +9,7 @@ on: - main jobs: - lint: + checks: runs-on: ubuntu-latest steps: - name: Checkout repository code @@ -27,3 +27,7 @@ jobs: - name: Check Formatting of TypeScript Code working-directory: frontend run: npm run format:check + + - name: Run Tests + working-directory: frontend + run: npm run test diff --git a/README.md b/README.md index 22737ad5..4e352d75 100644 --- a/README.md +++ b/README.md @@ -19,6 +19,8 @@ VITE_KEYCLOAK_URL = "https://identity-test.diamond.ac.uk" VITE_KEYCLOAK_REALM = "dls" VITE_KEYCLOAK_CLIENT_ID = "ImagingHubDev" VITE_KEYCLOAK_SCOPE = "openid profile posix-uid email" +VITE_GRAPHQL_HTTP_ENDPOINT = "https://graph-nightly.diamond.ac.uk/graphql" +VITE_GRAPHQL_WS_ENDPOINT = "wss://graph-nightly.diamond.ac.uk/graphql/ws" ``` #### Install dependencies and generate code from GraphQL schema diff --git a/backend/requirements.txt b/backend/requirements.txt index a05bdb1f..b07aa7f3 100644 --- a/backend/requirements.txt +++ b/backend/requirements.txt @@ -5,11 +5,11 @@ certifi==2024.12.14 click==8.1.8 dnspython==2.7.0 email_validator==2.2.0 -fastapi==0.115.6 +fastapi==0.137.2 fastapi-cli==0.0.7 -h11==0.14.0 +h11==0.16.0 httomolib -httpcore==1.0.7 +httpcore==1.0.9 httptools==0.6.4 httpx==0.28.1 idna==3.10 @@ -22,12 +22,12 @@ mdurl==0.1.2 networkx==3.4.2 numpy==2.2.2 packaging==24.2 -pillow==11.1.0 +pillow==12.3.0 pydantic==2.10.5 pydantic_core==2.27.2 Pygments==2.19.1 python-dotenv==1.0.1 -python-multipart==0.0.20 +python-multipart==0.0.31 PyWavelets==1.9.0 PyYAML==6.0.2 rich==13.9.4 @@ -36,11 +36,10 @@ scikit-image==0.25.0 scipy==1.15.1 shellingham==1.5.4 sniffio==1.3.1 -starlette==0.41.3 +starlette==1.3.1 tifffile==2025.1.10 typer==0.15.1 typing_extensions==4.12.2 uvicorn==0.34.0 uvloop==0.21.0 watchfiles==1.0.4 -Pillow>=10.0.0 diff --git a/frontend/.env.production b/frontend/.env.production index d5b7add4..347fe8f6 100644 --- a/frontend/.env.production +++ b/frontend/.env.production @@ -3,3 +3,5 @@ VITE_KEYCLOAK_URL = "https://identity.diamond.ac.uk" VITE_KEYCLOAK_REALM = "dls" VITE_KEYCLOAK_CLIENT_ID = "ImagingHub" VITE_KEYCLOAK_SCOPE = "openid profile posix-uid email" +VITE_GRAPHQL_HTTP_ENDPOINT = "https://graph.diamond.ac.uk/graphql" +VITE_GRAPHQL_WS_ENDPOINT = "wss://graph.diamond.ac.uk/graphql/ws" diff --git a/frontend/dashboard/src/App.tsx b/frontend/dashboard/src/App.tsx index 803cd790..2724f29a 100644 --- a/frontend/dashboard/src/App.tsx +++ b/frontend/dashboard/src/App.tsx @@ -4,7 +4,7 @@ import { CardContent, Container, Divider, - Grid2, + Grid, Typography, } from "@mui/material"; import { Link } from "react-router-dom"; @@ -38,7 +38,7 @@ const Dashboard: React.FC = () => { ImagingHub - + { desc="ePSIC workflow submission" linkTarget="ePSIC" /> - + ); diff --git a/frontend/ePSIC/src/App.tsx b/frontend/ePSIC/src/App.tsx index b5a41bd0..a04e7f2c 100644 --- a/frontend/ePSIC/src/App.tsx +++ b/frontend/ePSIC/src/App.tsx @@ -1,9 +1,11 @@ import { WorkflowForm } from "./components/workflows/WorkflowForm"; +import { ResourceForm } from "../../shared_components/ResourceForm"; export const App: React.FC = () => { return ( <> + ); }; diff --git a/frontend/ePSIC/src/components/workflows/WorkflowForm.tsx b/frontend/ePSIC/src/components/workflows/WorkflowForm.tsx index 7355ea64..5e47d687 100644 --- a/frontend/ePSIC/src/components/workflows/WorkflowForm.tsx +++ b/frontend/ePSIC/src/components/workflows/WorkflowForm.tsx @@ -60,67 +60,65 @@ export const WorkflowForm: FC = () => { ); return ( - - - ePSIC Workflows + + ePSIC Workflows -
{ - e.preventDefault(); - openLink(); - }} - > - - - Workflow - - - - - - - - - - { + e.preventDefault(); + openLink(); + }} + > + + + Workflow + + + + + + + + + + ) => { + const value = e.target.value; + setData((prev) => ({ ...prev, visit: value })); + }} + helperText={visitMatch ? "" : "Expected format: xx12345-1"} + error={!visitMatch} + /> - - - -
- + + + + ); }; diff --git a/frontend/i14/src/components/workflows/OptionSelect.tsx b/frontend/i14/src/components/workflows/OptionSelect.tsx new file mode 100644 index 00000000..58dc86b8 --- /dev/null +++ b/frontend/i14/src/components/workflows/OptionSelect.tsx @@ -0,0 +1,51 @@ +import React, { FC } from "react"; +import { + FormControl, + InputLabel, + Select, + IconButton, + Tooltip, + Grid, +} from "@mui/material"; +import InfoIcon from "@mui/icons-material/Info"; +import type { SelectChangeEvent } from "@mui/material/Select"; +import type { Option } from "../../types/workflowFields"; + +type Props = { + label: string; + value: string; + options: Option[]; + onChange: (e: SelectChangeEvent) => void; +}; + +const OptionSelect: FC = ({ label, value, options, onChange }) => { + const selected = options.find((o) => o.value === value); + + return ( + + {label} + + + + + + + + + + ); +}; + +export default OptionSelect; diff --git a/frontend/i14/src/components/workflows/WorkflowForm.tsx b/frontend/i14/src/components/workflows/WorkflowForm.tsx index 3702a46b..90c20cc5 100644 --- a/frontend/i14/src/components/workflows/WorkflowForm.tsx +++ b/frontend/i14/src/components/workflows/WorkflowForm.tsx @@ -1,118 +1,99 @@ -import React, { FC, ChangeEvent, useState } from "react"; +import React, { FC, useMemo, useState } from "react"; import { Button, - MenuItem, - IconButton, - InputLabel, + FormLabel, + TextField, + ToggleButton, + ToggleButtonGroup, Grid, - Select, Stack, - TextField, - Tooltip, Typography, } from "@mui/material"; -import InfoIcon from "@mui/icons-material/Info"; -import type { SelectChangeEvent } from "@mui/material/Select"; import { visitRegex } from "@diamondlightsource/sci-react-ui"; -type FormData = { visit: string; workflow: string }; +import { initialData } from "../../data/form"; +import { templateOptions } from "../../data/templates"; +import OptionSelect from "./OptionSelect"; -const initialData: FormData = { - visit: "cm23467-2", - workflow: "dpc-batch", -}; +import type { WorkflowFormData, Option } from "../../types/workflowFields"; export const WorkflowForm: FC = () => { - const [data, setData] = useState(initialData); + const techniques = ["dpc", "xanes", "xrd"] as const; + type ToggleGroup = (typeof techniques)[number]; + const getFilteredTemplates = (toggle: ToggleGroup): Option[] => { + return (templateOptions ?? []).filter((o) => o.value.includes(toggle)); + }; + + const [data, setData] = useState(() => { + const defaultTechnique = + techniques.find((t) => initialData.template.includes(t)) ?? techniques[0]; + return { + ...initialData, + technique: defaultTechnique, + }; + }); + const visitMatch = visitRegex.exec(data.visit); + const filteredTemplateOptions: Option[] = getFilteredTemplates( + data.technique + ); + + const handleToggleChange = ( + _event: React.MouseEvent, + next: ToggleGroup | null + ) => { + if (!next) return; + const filteredTemplates = getFilteredTemplates(next); + setData((prev) => ({ + ...prev, + technique: next, + template: filteredTemplates[0].value, + })); + }; + const openInNewTab = (url: string) => { const w = window.open(url, "_blank"); - if (w) w.focus(); + w?.focus(); }; - const openLink = () => { - if (!visitMatch) return; - const linkString = `https://workflows.diamond.ac.uk/templates/${data.workflow}/${data.visit}`; - openInNewTab(linkString); + const handleSubmit = (e: React.FormEvent) => { + e.preventDefault(); + const url = `https://workflows.diamond.ac.uk/templates/${data.template}/${data.visit}?outputFolder=${data.outpath}`; + openInNewTab(url); }; - const workflowOptions = [ - { - label: "DPC", - value: "dpc-batch", - desc: "DPC imaging produces an image of the phase shifts to the X-ray beam as a result of interaction with the sample by measuring the gradient of the phase and retrieving the phase shifts by a straightforward integration step.", - }, - { - label: "XANES Auto-processing", - value: "xanes", - desc: "XANES is a utility which attempts to stack a sequence of datasets acquired at different energy for a particular line group and perform alignment based on a line group.", - }, - { - label: "XANES Point", - value: "xanes-point", - desc: "XANES-point is a utility which takes in a scan file (inpath) and a line group (edge_element), performs windowing of this line group, and saves a two-column text file (outpath): the first column is the energy in keV, and the second column is the summed windowed MCA intensity across the 4 channels.", - }, - { - label: "XANES Sparse", - value: "xanes-sparse", - desc: "XANES-sparse is a utility which takes the last scan file of a sparse XANES scan (inpath), defines the 2D full grid, inserts the data in the correct rows, stack the images, and completes the missing data by using looped alternating steepest descent (ASD).", - }, - { - label: "XRD 1D", - value: "xrd1d-batch", - desc: "XRD can be used to spatially map changes in crystallographic direction, d-spacing or strain across a sample.", - }, - { - label: "XRD 2D", - value: "xrd2d-batch", - desc: "XRD 2D is a utility which performs Azimuthal integration (ExcaliburXRDIntegration) and saves result to a nxs file", - }, - ]; - - const option = workflowOptions.find( - (option) => option.value === data.workflow - ); - return ( - + I14 Workflows - -
{ - e.preventDefault(); - openLink(); - }} - > +
+ - - Workflow - - - - - - - - - + + + + setData((prev) => ({ ...prev, template: e.target.value })) + } + /> + { error={!visitMatch} /> + ) => { + setData((prev) => ({ ...prev, outpath: e.target.value })); + }} + /> + diff --git a/frontend/i14/src/data/form.ts b/frontend/i14/src/data/form.ts new file mode 100644 index 00000000..1230af8d --- /dev/null +++ b/frontend/i14/src/data/form.ts @@ -0,0 +1,7 @@ +import type { WorkflowFormData } from "../types/workflowFields"; + +export const initialData: WorkflowFormData = { + visit: "mg23967-1", + template: "dpc-batch", + outpath: "/dls/i14/data/", +}; diff --git a/frontend/i14/src/data/templates.ts b/frontend/i14/src/data/templates.ts new file mode 100644 index 00000000..cb3df06a --- /dev/null +++ b/frontend/i14/src/data/templates.ts @@ -0,0 +1,34 @@ +import type { Option } from "../types/workflowFields"; + +export const templateOptions: Option[] = [ + { + label: "DPC", + value: "dpc-batch", + desc: "DPC imaging produces an image of the phase shifts to the X-ray beam as a result of interaction with the sample by measuring the gradient of the phase and retrieving the phase shifts by a straightforward integration step.", + }, + { + label: "XANES Auto-processing", + value: "xanes", + desc: "XANES is a utility which attempts to stack a sequence of datasets acquired at different energy for a particular line group and perform alignment based on a line group.", + }, + { + label: "XANES Point", + value: "xanes-point", + desc: "XANES-point is a utility which takes in a scan file (inpath) and a line group (edge_element), performs windowing of this line group, and saves a two-column text file (outpath): the first column is the energy in keV, and the second column is the summed windowed MCA intensity across the 4 channels.", + }, + { + label: "XANES Sparse", + value: "xanes-sparse", + desc: "XANES-sparse is a utility which takes the last scan file of a sparse XANES scan (inpath), defines the 2D full grid, inserts the data in the correct rows, stack the images, and completes the missing data by using looped alternating steepest descent (ASD).", + }, + { + label: "XRD 1D", + value: "xrd1d-batch", + desc: "XRD can be used to spatially map changes in crystallographic direction, d-spacing or strain across a sample.", + }, + { + label: "XRD 2D", + value: "xrd2d-batch", + desc: "XRD 2D is a utility which performs Azimuthal integration (ExcaliburXRDIntegration) and saves result to a nxs file", + }, +]; diff --git a/frontend/i14/src/types/workflowFields.ts b/frontend/i14/src/types/workflowFields.ts new file mode 100644 index 00000000..c0a2d1ab --- /dev/null +++ b/frontend/i14/src/types/workflowFields.ts @@ -0,0 +1,2 @@ +type WorkflowFormData = { visit: string; template: string; outpath: string }; +type Option = { label: string; value: string; desc?: string }; diff --git a/frontend/package-lock.json b/frontend/package-lock.json index 543fd2e8..f12a0419 100644 --- a/frontend/package-lock.json +++ b/frontend/package-lock.json @@ -1,83 +1,127 @@ { "name": "imaginghub", - "version": "0.5.3", + "version": "0.8.1", "lockfileVersion": 3, "requires": true, "packages": { "": { "name": "imaginghub", - "version": "0.5.3", + "version": "0.8.1", "dependencies": { - "@diamondlightsource/davidia": "^1.0.3", - "@diamondlightsource/sci-react-ui": "^0.2.0", - "@dnd-kit/core": "^6.2.0", + "@diamondlightsource/davidia": "1.0.3", + "@diamondlightsource/sci-react-ui": "^0.6.2-alpha.1", + "@dnd-kit/core": "^6.3.1", "@dnd-kit/sortable": "^9.0.0", - "@mui/icons-material": "^6.1.7", - "@mui/material": "^6.4.8", + "@mui/icons-material": "^7.3.11", + "@mui/material": "^7.3.11", "@react-three/fiber": "^8.18.0", - "ajv": "^8.18.0", + "ajv": "^8.20.0", "ajv-formats": "^3.0.1", - "axios": "^1.7.9", - "graphql-ws": "^6.0.6", - "image-pixels": "^2.2.2", - "js-yaml": "^4.1.0", - "keycloak-js": "^26.0.5", + "axios": "^1.18.1", + "fast-png": "^8.0.0", + "graphql-ws": "^6.1.0", + "js-yaml": "^4.3.0", + 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"dev": true + "dev": true, + "license": "ISC" }, "node_modules/yaml": { - "version": "1.10.2", - "resolved": "https://registry.npmjs.org/yaml/-/yaml-1.10.2.tgz", - "integrity": "sha512-r3vXyErRCYJ7wg28yvBY5VSoAF8ZvlcW9/BwUzEtUsjvX/DKs24dIkuwjtuprwJJHsbyUbLApepYTR1BN4uHrg==", + "version": "2.9.0", + "resolved": "https://registry.npmjs.org/yaml/-/yaml-2.9.0.tgz", + "integrity": "sha512-2AvhNX3mb8zd6Zy7INTtSpl1F15HW6Wnqj0srWlkKLcpYl/gMIMJiyuGq2KeI2YFxUPjdlB+3Lc10seMLtL4cA==", + "dev": true, + "license": "ISC", + "bin": { + "yaml": "bin.mjs" + }, "engines": { - "node": ">= 6" + "node": ">= 14.6" + }, + "funding": { + "url": "https://github.com/sponsors/eemeli" } }, "node_modules/yargs": { @@ -10396,6 +11321,7 @@ "resolved": "https://registry.npmjs.org/yocto-queue/-/yocto-queue-0.1.0.tgz", "integrity": "sha512-rVksvsnNCdJ/ohGc6xgPwyN8eheCxsiLM8mxuE/t/mOVqJewPuO1miLpTHQiRgTKCLexL4MeAFVagts7HmNZ2Q==", "dev": true, + "license": "MIT", "engines": { "node": ">=10" }, @@ -10404,21 +11330,19 @@ } }, "node_modules/zustand": { - "version": "4.5.4", - "resolved": "https://registry.npmjs.org/zustand/-/zustand-4.5.4.tgz", - "integrity": "sha512-/BPMyLKJPtFEvVL0E9E9BTUM63MNyhPGlvxk1XjrfWTUlV+BR8jufjsovHzrtR6YNcBEcL7cMHovL1n9xHawEg==", + "version": "5.0.3", + "resolved": "https://registry.npmjs.org/zustand/-/zustand-5.0.3.tgz", + "integrity": "sha512-14fwWQtU3pH4dE0dOpdMiWjddcH+QzKIgk1cl8epwSE7yag43k/AD/m4L6+K7DytAOr9gGBe3/EXj9g7cdostg==", "license": "MIT", "peer": true, - "dependencies": { - "use-sync-external-store": "1.2.0" - }, "engines": { - "node": ">=12.7.0" + "node": ">=12.20.0" }, "peerDependencies": { - "@types/react": ">=16.8", + "@types/react": ">=18.0.0", "immer": ">=9.0.6", - "react": ">=16.8" + "react": ">=18.0.0", + "use-sync-external-store": ">=1.2.0" }, "peerDependenciesMeta": { "@types/react": { @@ -10429,6 +11353,9 @@ }, "react": { "optional": true + }, + "use-sync-external-store": { + "optional": true } } } diff --git a/frontend/package.json b/frontend/package.json index c358fa21..b25b0012 100644 --- a/frontend/package.json +++ b/frontend/package.json @@ -1,7 +1,7 @@ { "name": "imaginghub", "private": true, - "version": "0.5.3", + "version": "0.8.1", "type": "module", "scripts": { "dev": "vite", @@ -13,58 +13,64 @@ "preview": "vite preview", "relay": "relay-compiler", "relay:watch": "relay-compiler --watch", - "prepare": "husky" + "prepare": "husky", + "test": "vitest" }, "dependencies": { - "@diamondlightsource/davidia": "^1.0.3", - "@diamondlightsource/sci-react-ui": "^0.2.0", - "@dnd-kit/core": "^6.2.0", + "@diamondlightsource/davidia": "1.0.3", + "@diamondlightsource/sci-react-ui": "^0.6.2-alpha.1", + "@dnd-kit/core": "^6.3.1", "@dnd-kit/sortable": "^9.0.0", - "@mui/icons-material": "^6.1.7", - "@mui/material": "^6.4.8", + "@mui/icons-material": "^7.3.11", + "@mui/material": "^7.3.11", "@react-three/fiber": "^8.18.0", - "ajv": "^8.18.0", + "ajv": "^8.20.0", "ajv-formats": "^3.0.1", - "axios": "^1.7.9", - "graphql-ws": "^6.0.6", - "image-pixels": "^2.2.2", - "js-yaml": "^4.1.0", - "keycloak-js": "^26.0.5", + "axios": "^1.18.1", + "fast-png": "^8.0.0", + "graphql-ws": "^6.1.0", + "js-yaml": "^4.3.0", + "keycloak-js": "^26.2.4", "ndarray": "^1.0.19", "react": "^18.3.1", "react-dnd": "^16.0.1", "react-dnd-html5-backend": "^16.0.1", "react-dom": "^18.3.1", - "react-relay": "^20.0.0", - "react-router-dom": "^6.23.0", + "react-relay": "^20.1.1", + "react-router-dom": "^6.30.4", "relay-runtime": "^20.0.0", "tiff.js": "^1.0.0" }, "devDependencies": { "@eslint/js": "^9.13.0", + "@testing-library/dom": "^10.4.1", + "@testing-library/react": "^16.3.2", + "@testing-library/user-event": "^14.6.1", "@types/js-yaml": "^4.0.9", "@types/ndarray": "^1.0.14", - "@types/node": "^22.13.4", - "@types/react": "^18.2.43", - "@types/react-dom": "^18.2.17", + "@types/node": "^22.20.1", + "@types/react": "^18.3.31", + "@types/react-dom": "^18.3.7", "@types/react-relay": "^18.2.1", - "@types/relay-runtime": "^19.0.2", - "@vitejs/plugin-react": "^4.3.3", + "@types/relay-runtime": "^19.0.3", + "@vitejs/plugin-react": "^4.7.0", "babel-plugin-relay": "^20.1.1", - "eslint": "^9.13.0", + "eslint": "^9.39.5", "eslint-config-prettier": "^10.1.8", - "eslint-plugin-prettier": "^5.5.4", + "eslint-plugin-prettier": "^5.5.6", "eslint-plugin-react": "^7.37.5", - "eslint-plugin-react-hooks": "^5.0.0", - "eslint-plugin-react-refresh": "^0.4.14", - "globals": "^15.11.0", + "eslint-plugin-react-hooks": "^5.2.0", + "eslint-plugin-react-refresh": "^0.4.26", + "globals": "^15.15.0", "husky": "^9.1.7", - "lint-staged": "^16.1.5", - "relay-compiler": "^20.0.0", + "jsdom": "^29.1.1", + "lint-staged": "^16.4.0", + "relay-compiler": "^20.1.1", "typescript": "~5.6.2", - "typescript-eslint": "^8.11.0", - "vite": "^5.4.10", - "vite-plugin-relay": "^2.1.0" + "typescript-eslint": "^8.64.0", + "vite": "^6.4.3", + "vite-plugin-relay": "^2.1.0", + "vitest": "^4.1.10" }, "lint-staged": { "*.{ts,tsx,js,jsx}": [ diff --git a/frontend/relay.config.json b/frontend/relay.config.json index d84850ef..8e76b352 100644 --- a/frontend/relay.config.json +++ b/frontend/relay.config.json @@ -3,12 +3,18 @@ "projects": { "tomography": { "language": "typescript", - "schema": "src/workflows.graphql", + "schema": "src/supergraph.graphql", + "eagerEsModules": true + }, + "unified": { + "language": "typescript", + "schema": "src/supergraph.graphql", "eagerEsModules": true } }, "sources": { - "tomography/src": "tomography" + "tomography/src": "tomography", + "unified/src": "unified" }, "excludes": ["**/node_modules/**", "**/__mocks__/**", "**/__generated__/**"] } diff --git a/frontend/shared_components/ResourceForm.tsx b/frontend/shared_components/ResourceForm.tsx new file mode 100644 index 00000000..b4083626 --- /dev/null +++ b/frontend/shared_components/ResourceForm.tsx @@ -0,0 +1,81 @@ +import { FC, ChangeEvent, useState } from "react"; +import { InputLabel, Grid, Stack, TextField } from "@mui/material"; + +type FormRes = { cpus: string; gpus: string; nprocs: string; memory: string }; + +const initialData: FormRes = { + cpus: "1", + gpus: "0", + nprocs: "8", + memory: "16Gi", +}; + +export const ResourceForm: FC = () => { + const [res, setRes] = useState(initialData); + + return ( + + + + + Resources + + ) => { + const value = e.target.value; + setRes((prev) => ({ ...prev, cpus: value })); + }} + /> + ) => { + const value = e.target.value; + setRes((prev) => ({ ...prev, gpus: value })); + }} + /> + ) => { + const value = e.target.value; + setRes((prev) => ({ ...prev, nprocs: value })); + }} + /> + ) => { + const value = e.target.value; + setRes((prev) => ({ ...prev, memory: value })); + }} + /> + + + + ); +}; + +export default ResourceForm; diff --git a/frontend/src/App.tsx b/frontend/src/App.tsx index 00293aaa..70793831 100644 --- a/frontend/src/App.tsx +++ b/frontend/src/App.tsx @@ -2,6 +2,7 @@ import { Route, BrowserRouter, Routes } from "react-router-dom"; import { default as TomographyApp } from "../tomography/src/App"; import { App as I14App } from "../i14/src/App"; import { App as EpsicApp } from "../ePSIC/src/App"; +import { App as UnifiedApp } from "../unified/src/App"; import { default as Dashboard } from "../dashboard/src/App"; import { default as Layout } from "./Layout"; @@ -14,6 +15,7 @@ const App: React.FC = () => { } /> } /> } /> + } /> diff --git a/frontend/src/RelayEnvironment.ts b/frontend/src/RelayEnvironment.ts index 7a2c57aa..f13b6e76 100644 --- a/frontend/src/RelayEnvironment.ts +++ b/frontend/src/RelayEnvironment.ts @@ -11,8 +11,8 @@ import { import keycloak from "./keycloak"; import { createClient } from "graphql-ws"; -const HTTP_ENDPOINT = "https://workflows.diamond.ac.uk/graphql"; -const WS_ENDPOINT = "wss://workflows.diamond.ac.uk/graphql/ws"; +const HTTP_ENDPOINT = import.meta.env.VITE_GRAPHQL_HTTP_ENDPOINT; +const WS_ENDPOINT = import.meta.env.VITE_GRAPHQL_WS_ENDPOINT; const fetchFn: FetchFunction = async (request, variables) => { // Refresh token if needed (minValidity in seconds) diff --git a/frontend/src/main.tsx b/frontend/src/main.tsx index 119cc339..51838ddf 100644 --- a/frontend/src/main.tsx +++ b/frontend/src/main.tsx @@ -2,14 +2,17 @@ import { StrictMode } from "react"; import { createRoot } from "react-dom/client"; import App from "./App"; import { CssBaseline } from "@mui/material"; -import { ThemeProvider, DiamondTheme } from "@diamondlightsource/sci-react-ui"; +import { + ThemeProvider, + DiamondDSTheme, +} from "@diamondlightsource/sci-react-ui"; import { RelayEnvironmentProvider } from "react-relay"; import { getRelayEnvironment } from "./RelayEnvironment"; getRelayEnvironment().then((environment) => { createRoot(document.getElementById("root")!).render( - + diff --git a/frontend/src/supergraph.graphql b/frontend/src/supergraph.graphql new file mode 100644 index 00000000..68a7249b --- /dev/null +++ b/frontend/src/supergraph.graphql @@ -0,0 +1,1073 @@ +type Artifact { + """The file name of the artifact""" + name: String! + + """The download URL for the artifact""" + url: Url! + + """The MIME type of the artifact data""" + mimeType: String! +} + +scalar Creator + +""" +Implement the DateTime scalar + +The input/output is a string in RFC3339 format. +""" +scalar DateTime + +""" +The `JSON` scalar type represents JSON values as specified by [ECMA-404](https://ecma-international.org/wp-content/uploads/ECMA-404_2nd_edition_december_2017.pdf). +""" +scalar JSON + +"""A scalar that can represent any JSON Object value.""" +scalar JSONObject + +"""A single log line streamed from a pod""" +type LogEntry { + """The log line content""" + content: String! + + """The name of the pod producing the log""" + podName: String! +} + +"""The root mutation of the service""" +type Mutation { + """submit specific workflow template""" + submitWorkflowTemplate(name: String!, visit: VisitInput!, parameters: JSON!): Workflow! + createExperimentDefinition(input: CreateExperimentDefinitionInput!): ExperimentDefinition + experimentDefinition(id: UUID!): ExperimentDefinitionMutations + createInstrumentSession(input: CreateInstrumentSessionInput!): InstrumentSession! + instrumentSession(proposalNumber: Int!, instrumentSessionNumber: Int!): InstrumentSessionMutations + createOrValidateSamples(input: CreateOrValidateSampleInput!): CreateSamplesResponse! + createSamples(input: CreateSampleInput!): [Sample!]! @deprecated(reason: "Will be replaced by createOrValidateSamples") + sample(sampleId: UUID!): SampleMutations +} + +"""Represents Relay Node types""" +union NodeValue = Workflow + +"""Information about pagination in a connection""" +type PageInfo { + """When paginating backwards, are there more items?""" + hasPreviousPage: Boolean! + + """When paginating forwards, are there more items?""" + hasNextPage: Boolean! + + """When paginating backwards, the cursor to continue.""" + startCursor: String + + """When paginating forwards, the cursor to continue.""" + endCursor: String +} + +"""The root query of the service""" +type Query { + node(id: ID!): NodeValue + + """Get a single [`Workflow`] by proposal, visit, and name""" + workflow(visit: VisitInput!, name: String!): Workflow! + + """Find all workflows available for a given visit""" + workflows(visit: VisitInput!, cursor: String, limit: Int, filter: WorkflowFilter): WorkflowConnection! + + """Retrieves a single cluster workflow template by name""" + workflowTemplate(name: String!): WorkflowTemplate! + + """ + Retrieves all cluster workflow templates with respective pagination data + """ + workflowTemplates(cursor: String, limit: Int, filter: WorkflowTemplatesFilter): WorkflowTemplateConnection! + jsonSchema(url: String!): JSONSchema + jsonSchemas(type: String = null, instrument: String = null): [JSONSchema!]! + experimentDefinition(id: UUID!): ExperimentDefinition + experimentDefinitions(instrumentSessions: [InstrumentSessionInput!]!, first: Int = null, last: Int = null, after: String = null, before: String = null): ExperimentDefinitionConnection + experiment(id: UUID!): Experiment + experiments(instrumentSessions: [InstrumentSessionInput!]!, first: Int = null, last: Int = null, after: String = null, before: String = null): ExperimentConnection + + """Get a proposal by its number""" + proposal(proposalNumber: Int!): Proposal + + """Get a list of proposals""" + proposals(first: Int = null, last: Int = null, after: String = null, before: String = null, sortBy: [ProposalSortInput!] = null, filterBy: ProposalFilterInput = null): ProposalConnection! + + """ + Get a proposal by its reference string e.g. 'MX12345'. The lookup is case-insensitive. + """ + proposalByReference(reference: String!): Proposal + + """Get a instrument session""" + instrumentSession(proposalNumber: Int!, instrumentSessionNumber: Int!): InstrumentSession + + """ + Get an instrument session by its reference string e.g. 'MX12345-1'. The lookup is case-insensitive. + """ + instrumentSessionByReference(reference: String!): InstrumentSession + + """Get a list of instrument sessions""" + instrumentSessions(proposalNumber: Int = null, proposalCategory: String = null, first: Int = null, last: Int = null, after: String = null, before: String = null, sortBy: [InstrumentSessionSortInput!] = null, filterBy: InstrumentSessionFilterInput = null): InstrumentSessionConnection! + + """Get an instrument by name""" + instrumentByName(name: String!): Instrument + + """Get an instrument by key""" + instrumentByKey(key: String!): Instrument + + """Get a list of instruments""" + instruments(scienceGroup: String = null): [Instrument!]! + + """Get an account""" + account(username: String!): Account + + """Get a sample by its id""" + sample(sampleId: UUID!): Sample + + """Get a list of samples associated with a given instrument session""" + samples(first: Int!, instrumentSessions: [InstrumentSessionInput!] = null, filter: SampleFilterInput! = {schemaUrl: null, createdTime: null, updatedTime: null, name: null, data: null}, before: String = null, after: String = null, last: Int = null, orderBy: SampleOrder! = {name: null, createdTime: null, updatedTime: null}): SampleConnection! +} + +"""Supported DLS science groups""" +enum ScienceGroup { + """Macromolecular Crystallography""" + MX + + """Workflows Examples""" + EXAMPLES + + """Magnetic Materials""" + MAGNETIC_MATERIALS + + """Soft Condensed Matter""" + CONDENSED_MATTER + + """Imaging and Microscopy""" + IMAGING + + """Biological Cryo-Imaging""" + BIO_CRYO_IMAGING + + """Structures and Surfaces""" + SURFACES + + """Crystallography""" + CRYSTALLOGRAPHY + + """Spectroscopy""" + SPECTROSCOPY +} + +"""The root mutation of the service""" +type Subscription { + """Processing to subscribe to logs for a single pod of a workflow""" + logs(visit: VisitInput!, workflowName: String!, taskId: String!): LogEntry! + + """Processing to subscribe to data for all workflows in a session""" + workflow(visit: VisitInput!, name: String!): Workflow! +} + +type Task { + """Unique name of the task""" + id: String! + + """Display name of the task""" + name: String! + + """Current status of a task""" + status: TaskStatus! + + """Parent of a task""" + depends: [String!]! + + """Children of a task""" + dependencies: [String!]! + + """Artifacts produced by a task""" + artifacts: [Artifact!]! + + """Node type - Pod, DAG, etc""" + stepType: String! + + """Start time for a task on a workflow""" + startTime: DateTime + + """End time for a task on a workflow""" + endTime: DateTime + + """ + A human readable message indicating details about why this step is in this condition + """ + message: String +} + +enum TaskStatus { + PENDING + RUNNING + SUCCEEDED + SKIPPED + FAILED + ERROR + OMITTED +} + +scalar Template + +"""Information about where the template is stored""" +type TemplateSource { + """The URL of the GitHub repository""" + repositoryUrl: String! + + """The path to the template within the repository""" + path: String! + + """The current tracked branch of the repository""" + targetRevision: String! +} + +""" +URL is a String implementing the [URL Standard](http://url.spec.whatwg.org/) +""" +scalar Url + +"""A visit to an instrument as part of a session""" +type Visit { + """Project Proposal Code""" + proposalCode: String! + + """Project Proposal Number""" + proposalNumber: Int! + + """Session visit Number""" + number: Int! +} + +"""A visit to an instrument as part of a session""" +input VisitInput { + """Project Proposal Code""" + proposalCode: String! + + """Project Proposal Number""" + proposalNumber: Int! + + """Session visit Number""" + number: Int! +} + +type Workflow { + """The unique ID derived from the visit and name""" + id: ID! + + """The name given to the workflow, unique within a given visit""" + name: String! + + """The visit the Workflow was run against""" + visit: Visit! + + """The current status of the workflow""" + status: WorkflowStatus + + """The top-level workflow parameters""" + parameters: JSONObject + + """The name of the template used to run the workflow""" + templateRef: String + + """The workflow creator""" + creator: WorkflowCreator! +} + +type WorkflowConnection { + """Information to aid in pagination.""" + pageInfo: PageInfo! + + """A list of edges.""" + edges: [WorkflowEdge!]! + + """A list of nodes.""" + nodes: [Workflow!]! +} + +"""Information about the creator of a workflow.""" +type WorkflowCreator { + """ + An identifier unique to the creator of the workflow. + Typically this is the creator's Fed-ID. + """ + creatorId: String! +} + +"""An edge in a connection.""" +type WorkflowEdge { + """The item at the end of the edge""" + node: Workflow! + + """A cursor for use in pagination""" + cursor: String! +} + +"""All tasks in the workflow have errored""" +type WorkflowErroredStatus { + """Time at which this workflow started""" + startTime: DateTime! + + """Time at which this workflow completed""" + endTime: DateTime! + + """ + A human readable message indicating details about why the workflow is in this condition + """ + message: String + + """Tasks created by the workflow""" + tasks: [Task!]! +} + +"""All tasks in the workflow have failed""" +type WorkflowFailedStatus { + """Time at which this workflow started""" + startTime: DateTime! + + """Time at which this workflow completed""" + endTime: DateTime! + + """ + A human readable message indicating details about why the workflow is in this condition + """ + message: String + + """Tasks created by the workflow""" + tasks: [Task!]! +} + +"""All the supported Workflows filters""" +input WorkflowFilter { + """The status field for a workflow""" + workflowStatusFilter: WorkflowStatusFilter + + """The fedid of the user who created the workflow""" + creator: Creator + + """The name of the workflow template""" + template: Template +} + +type WorkflowPendingStatus { + """ + A human readable message indicating details about why the workflow is in this condition + """ + message: String +} + +type WorkflowRunningStatus { + """Time at which this workflow started""" + startTime: DateTime! + + """ + A human readable message indicating details about why the workflow is in this condition + """ + message: String + + """Tasks created by the workflow""" + tasks: [Task!]! +} + +"""The status of a workflow""" +union WorkflowStatus = WorkflowPendingStatus | WorkflowRunningStatus | WorkflowSucceededStatus | WorkflowFailedStatus | WorkflowErroredStatus + +"""Represents workflow status filters""" +input WorkflowStatusFilter { + pending: Boolean! = false + running: Boolean! = false + succeeded: Boolean! = false + failed: Boolean! = false + error: Boolean! = false +} + +"""All tasks in the workflow have succeded""" +type WorkflowSucceededStatus { + """Time at which this workflow started""" + startTime: DateTime! + + """Time at which this workflow completed""" + endTime: DateTime! + + """ + A human readable message indicating details about why the workflow is in this condition + """ + message: String + + """Tasks created by the workflow""" + tasks: [Task!]! +} + +type WorkflowTemplate { + """The name given to the workflow template, globally unique""" + name: String! + + """The group who maintains the workflow template""" + maintainer: String! + + """A human readable title for the workflow template""" + title: String + + """A human readable description of the workflow which is created""" + description: String + + """The repository storing the code associated with this template.""" + repository: String + + """A JSON Schema describing the arguments of a Workflow Template""" + arguments: JSON! + + """ + A JSON Forms UI Schema describing how to render the arguments of the Workflow Template + """ + uiSchema: JSON + + """Information about where the template is obtained from""" + templateSource: TemplateSource +} + +type WorkflowTemplateConnection { + """Information to aid in pagination.""" + pageInfo: PageInfo! + + """A list of edges.""" + edges: [WorkflowTemplateEdge!]! + + """A list of nodes.""" + nodes: [WorkflowTemplate!]! +} + +"""An edge in a connection.""" +type WorkflowTemplateEdge { + """The item at the end of the edge""" + node: WorkflowTemplate! + + """A cursor for use in pagination""" + cursor: String! +} + +"""Supported label filters for ClusterWorkflowTemplates""" +input WorkflowTemplatesFilter { + """The science group owning the template eg imaging""" + scienceGroup: [ScienceGroup!] +} + +"""A JSON schema""" +type JSONSchema { + """The identifier of the schema""" + id: String! + + """A URL from which the schema can be accessed""" + url: String! + + """The type of object the shema describes (if known)""" + type: String + + """The title of the schema""" + title: String + + """The version of the schema""" + version: String + + """The instrument the schema was created for""" + instrument: String + + """The description og the schema""" + description: String +} + +"""Values required to create an experiment definition""" +input CreateExperimentDefinitionInput { + name: String! + data: JSON! + dataSchemaUrl: String! + proposalNumber: Int! + instrumentSessionNumber: Int! +} + +"""Values required for the createExperiments mutation""" +input CreateExperimentsInput { + experiments: [ExperimentInput!]! +} + +type Experiment { + id: UUID! + name: String! + createdTime: DateTime! + updatedTime: DateTime! + experimentDefinition: ExperimentDefinition! + + """The sample that this experiment is associated with""" + sample: Sample! +} + +type ExperimentConnection { + edges: [ExperimentEdge!]! + pageInfo: PageInfo! +} + +type ExperimentDefinition { + id: UUID! + name: String! + createdTime: DateTime! + updatedTime: DateTime! + data: JSON! + dataSchemaUrl: String! + proposalNumber: Int! + instrumentSessionNumber: Int! + + """ + The instrument session that this experiment definition is associated with + """ + instrumentSession: InstrumentSession! + + """Experiments associated with this experiment definition""" + experiments: [Experiment!]! +} + +type ExperimentDefinitionConnection { + edges: [ExperimentDefinitionEdge!]! + pageInfo: PageInfo! +} + +type ExperimentDefinitionEdge { + cursor: String! + node: ExperimentDefinition! +} + +"""Mutations for a given experiment defintion""" +type ExperimentDefinitionMutations { + createExperiments(input: CreateExperimentsInput!): [Experiment!]! +} + +type ExperimentEdge { + cursor: String! + node: Experiment! +} + +"""Values required to create an experiment""" +input ExperimentInput { + name: String! + sampleId: UUID! +} + +type InstrumentSession { + instrumentSessionNumber: Int! + proposal: Proposal + + """Experiment Definitions""" + experimentDefinitions(first: Int = null, last: Int = null, after: String = null, before: String = null): ExperimentDefinitionConnection! + + """Experiments associated with this session""" + experiments(first: Int = null, last: Int = null, after: String = null, before: String = null): ExperimentConnection! + instrumentSessionId: Int! @deprecated(reason: "instrument_session_id is deprecated and will be removed in a future version.") + startTime: DateTime + endTime: DateTime + type: String + state: String + riskRating: String + + """ + A human-readable reference for this session in the form '-' e.g. 'MX12345-1'. + """ + instrumentSessionReference: String + instrument: Instrument! + roles: [InstrumentSessionRole!]! + + """Samples associated with a given instrument session""" + samples(first: Int!, filter: SampleFilterInput! = {schemaUrl: null, createdTime: null, updatedTime: null, name: null, data: null}, before: String = null, after: String = null, last: Int = null, orderBy: SampleOrder! = {name: null, createdTime: null, updatedTime: null}): SampleConnection! +} + +"""Values required to uniquely identify an instrument session""" +input InstrumentSessionInput { + proposalNumber: Int! + instrumentSessionNumber: Int! +} + +type Proposal { + proposalNumber: Int! + proposalCategory: String + title: String + summary: String + state: ProposalState! + + """ + A human-readable reference for this proposal in the form '' e.g. 'MX12345'. + """ + proposalReference: String + instrumentSessions: [InstrumentSession!]! + instruments: [Instrument!]! + roles: [ProposalAccount!]! +} + +type Sample { + id: UUID! + experiments: [Experiment!]! + name: String! + data: JSON! + createdTime: DateTime! + updatedTime: DateTime! + dataSchemaUrl: String! + + """Samples from which this sample is derived""" + parents(first: Int = null, before: String = null, after: String = null, last: Int = null): SampleConnection! + + """Samples derived from this sample""" + children(first: Int = null, before: String = null, after: String = null, last: Int = null): SampleConnection! + + """Events linked to this sample""" + events(first: Int = null, before: String = null, after: String = null, last: Int = null): SampleEventConnection! + + """The JSON schema that the sample's `data` conforms to""" + dataSchema: JSON! + + """The instrument sessions that this sample is associated with""" + instrumentSessions: [InstrumentSession!]! + images: [SampleImage!]! +} + +scalar UUID + +type Account { + accountId: Int! @deprecated(reason: "account_id is deprecated and will be removed in a future version.") + username: String! + emailAddress: String + title: String + givenName: String + familyName: String + type: AccountType! + state: AccountState! + proposalRoles: [ProposalAccount!]! + instrumentSessionRoles: [InstrumentSessionRole!]! +} + +enum AccountState { + enabled + disabled +} + +enum AccountType { + user + staff + functional +} + +input CreateInstrumentSessionInput { + """Number of the proposal the session is for""" + proposalNumber: Int! + + """Name of the instrument the session is for""" + instrumentName: String! + + """ + Instrument Session information that isn't needed by the Session Service but should be passed through the UAS + """ + sessionInfo: String! +} + +input DateTimeFilterInput { + eq: DateTime = null + neq: DateTime = null + gt: DateTime = null + lt: DateTime = null + gte: DateTime = null + lte: DateTime = null +} + +type Instrument { + name: String! + key: String! + scienceGroup: String + description: String + proposals: [Proposal!]! + instrumentSessions: [InstrumentSession!]! +} + +type InstrumentSessionConnection { + edges: [InstrumentSessionEdge!]! + pageInfo: PageInfo! +} + +type InstrumentSessionEdge { + cursor: String! + node: InstrumentSession! +} + +input InstrumentSessionFilterInput { + instrumentSessionNumber: IntFilterInput = null + startTime: DateTimeFilterInput = null + endTime: DateTimeFilterInput = null + type: StringFilterInput = null + state: InstrumentSessionStateFilterInput = null + riskRating: StringFilterInput = null + proposalNumber: IntFilterInput = null +} + +type InstrumentSessionMutations { + instrumentSessionNumber: Int! + proposalNumber: Int! + + """Create or validate samples associated with this instrument session""" + createOrValidateSamples(input: CreateOrValidateSampleInputBase!): CreateSamplesResponse! +} + +type InstrumentSessionRole { + instrumentSession: InstrumentSession! + account: Account! + role: String! + onSite: Boolean! +} + +enum InstrumentSessionSortField { + instrumentSessionNumber + startTime + endTime + type + state + riskRating + proposalNumber +} + +input InstrumentSessionSortInput { + field: InstrumentSessionSortField! + orderBy: SortOrder! +} + +enum InstrumentSessionState { + CANCELLED + COMPLETED + FUTURE + IN_PROGRESS +} + +input InstrumentSessionStateFilterInput { + eq: InstrumentSessionState = null + neq: InstrumentSessionState = null +} + +input IntFilterInput { + eq: Int = null + neq: Int = null + gt: Int = null + lt: Int = null + gte: Int = null + lte: Int = null +} + +type ProposalAccount { + proposal: Proposal! + account: Account! + role: String! +} + +type ProposalConnection { + edges: [ProposalEdge!]! + pageInfo: PageInfo! +} + +type ProposalEdge { + cursor: String! + node: Proposal! +} + +input ProposalFilterInput { + proposalNumber: IntFilterInput = null + proposalCategory: StringFilterInput = null + title: StringFilterInput = null + state: ProposalStateFilterInput = null +} + +enum ProposalSortField { + proposalNumber +} + +input ProposalSortInput { + field: ProposalSortField! + orderBy: SortOrder! +} + +enum ProposalState { + OPEN + CLOSED + CANCELLED +} + +input ProposalStateFilterInput { + eq: ProposalState = null + neq: ProposalState = null +} + +enum SortOrder { + ASC + DESC +} + +input StringFilterInput { + eq: String = null + neq: String = null + contains: String = null + notContains: String = null + startsWith: String = null + endsWith: String = null +} + +input AddSampleEventInput { + description: String! +} + +input CreateOrValidateSampleInput { + """URL of the JSON schema the samples' `data` should be validated against""" + dataSchemaUrl: String! + + """Samples to be created""" + samples: [SampleIn!]! + + """ + Whether or not the provided samples should only be validated and not created + """ + validateOnly: Boolean! = false + + """Number of the proposal the samples should be associated with""" + proposalNumber: Int! + + """Number of the instrument session the samples should be associated with""" + instrumentSessionNumber: Int! +} + +input CreateOrValidateSampleInputBase { + """URL of the JSON schema the samples' `data` should be validated against""" + dataSchemaUrl: String! + + """Samples to be created""" + samples: [SampleIn!]! + + """ + Whether or not the provided samples should only be validated and not created + """ + validateOnly: Boolean! = false +} + +input CreateSampleInput { + proposalNumber: Int! + instrumentSessionNumber: Int! + samples: [SampleInLegacy!]! + validateOnly: Boolean! = false +} + +"""Return type when creating or validating samples""" +type CreateSamplesResponse { + """Whether the operation has succeeded without validation errors""" + success: Boolean! + + """Samples that have been created""" + samples: [Sample!]! + + """Errors that occurred during sample validation""" + errors: [SampleValidationError!]! +} + +input DatetimeOperatorInput { + """ + Will filter to items where the `DateTime` field is greater than (i.e. after) the provided value + """ + gt: DateTime = null + + """ + Will filter to items where the `DateTime` field is less than (i.e. before) the provided value + """ + lt: DateTime = null +} + +"""The details of sample validation error""" +type ErrorDetails { + """The type of error that occurred""" + type: String! + + """ + Tuple of strings identifying where in the sample schema the error occurred. + """ + location: [String!]! + + """A human readable error message.""" + message: String! +} + +input JSONOperator @oneOf { + stringOperator: StringOperatorInput = null + datetimeOperator: DatetimeOperatorInput = null + numericOperator: NumericOperatorInput = null +} + +input JSONOperatorInput { + """A JSON path specifying the value to filter. Must start with '$.'""" + path: String! + + """The operator to apply to the JSON field""" + operator: JSONOperator! +} + +input NumericOperatorInput { + """ + Will filter to items where the numeric field is greater than the provided value + """ + gt: Float = null + + """ + Will filter to items where the numeric field is less than the provided value + """ + lt: Float = null +} + +type SampleConnection { + edges: [SampleEdge!]! + pageInfo: PageInfo! +} + +type SampleEdge { + cursor: String! + node: Sample! +} + +type SampleEvent { + id: UUID! + timestamp: DateTime! + description: String! +} + +type SampleEventConnection { + edges: [SampleEventEdge!]! + pageInfo: PageInfo! +} + +type SampleEventEdge { + cursor: String! + node: SampleEvent! +} + +input SampleFilterInput { + """Filter on the `schemaUrl` field of `Sample`""" + schemaUrl: StringOperatorInput = null + + """Filter on the `createdTime` field of `Sample`""" + createdTime: DatetimeOperatorInput = null + + """Filter on the `createdTime` field of `Sample`""" + updatedTime: DatetimeOperatorInput = null + + """Filter on the `name` field of `Sample`""" + name: StringOperatorInput = null + + """Filter on the `data` field of `Sample`""" + data: [JSONOperatorInput!] = null +} + +type SampleImage { + url: String! + filename: String! +} + +input SampleIn { + """Name of the sample""" + name: String! + + """Data of the sample""" + data: JSON! +} + +input SampleInLegacy { + name: String! + data: JSON! + dataSchemaUrl: String! + parentIds: [Int!] = null + children: [SampleInLegacy!] = null +} + +type SampleMutations { + sampleId: UUID! + updateSample(input: UpdateSampleInput!): UpdateSampleResponse! + linkInstrumentSessionToSample(proposalNumber: Int!, instrumentSessionNumber: Int!): Void + addSampleEvent(sampleEvent: AddSampleEventInput!): SampleEvent! + createSampleImageUploadUrl(filename: String!, contentType: String!, contentLength: Int!): String! +} + +input SampleOrder { + name: SortingOrder = null + createdTime: SortingOrder = null + updatedTime: SortingOrder = null +} + +"""The details of errors occurred when validating a sample""" +type SampleValidationError { + """ + The index of the sample in CreateSampleInput.samples for which the error occurred + """ + index: Int! + + """Errors that occurred when validating the sample""" + errors: [ErrorDetails!]! +} + +enum SortingOrder { + ASC + DESC +} + +"""Conditions used to filter results based on the value of a String field""" +input StringOperatorInput { + """ + Will filter to items where the `String` field is equal to the provided value + """ + eq: String = null + + """ + Will filter to items where the `String` field is not equal to the provided value + """ + ne: String = null + + """ + Will filter to items where the `String` field is a member of the provided value + """ + in: [String!] = null + + """ + Will filter to items where the `String` field is not a member of the provided value + """ + nin: [String!] = null + + """ + Will filter to items where the `String` field is contains the provided value + """ + contains: String = null +} + +input UpdateSampleInput { + """Name of the sample""" + name: String + + """Data of the sample""" + data: JSON + + """URL of the JSON schema the samples' `data` should be validated against""" + dataSchemaUrl: String +} + +"""Return type when creating or validating samples""" +type UpdateSampleResponse { + """Whether the operation has succeeded without validation errors""" + success: Boolean! + + """Sample that has been updated""" + sample: Sample + + """Errors that occurred during sample validation""" + errors: [SampleValidationError!]! +} + +"""Represents NULL values""" +scalar Void \ No newline at end of file diff --git a/frontend/src/workflows.graphql b/frontend/src/workflows.graphql deleted file mode 100644 index be4cbf8c..00000000 --- a/frontend/src/workflows.graphql +++ /dev/null @@ -1,859 +0,0 @@ -schema - @link(url: "https://specs.apollo.dev/link/v1.0") - @link(url: "https://specs.apollo.dev/join/v0.3", for: EXECUTION) -{ - query: Query - mutation: Mutation - subscription: Subscription -} - -directive @join__enumValue(graph: join__Graph!) repeatable on ENUM_VALUE - -directive @join__field(graph: join__Graph, requires: join__FieldSet, provides: join__FieldSet, type: String, external: Boolean, override: String, usedOverridden: Boolean) repeatable on FIELD_DEFINITION | INPUT_FIELD_DEFINITION - -directive @join__graph(name: String!, url: String!) on ENUM_VALUE - -directive @join__implements(graph: join__Graph!, interface: String!) repeatable on OBJECT | INTERFACE - -directive @join__type(graph: join__Graph!, key: join__FieldSet, extension: Boolean! = false, resolvable: Boolean! = true, isInterfaceObject: Boolean! = false) repeatable on OBJECT | INTERFACE | UNION | ENUM | INPUT_OBJECT | SCALAR - -directive @join__unionMember(graph: join__Graph!, member: String!) repeatable on UNION - -directive @link(url: String, as: String, for: link__Purpose, import: [link__Import]) repeatable on SCHEMA - -type Account - @join__type(graph: INSTRUMENT_SESSIONS) -{ - accountId: Int! - username: String! - emailAddress: String - title: String - givenName: String - familyName: String - type: AccountType! - state: AccountState! - proposalRoles: [ProposalAccount!]! - instrumentSessionRoles: [InstrumentSessionRole!]! -} - -enum AccountState - @join__type(graph: INSTRUMENT_SESSIONS) -{ - enabled @join__enumValue(graph: INSTRUMENT_SESSIONS) - disabled @join__enumValue(graph: INSTRUMENT_SESSIONS) -} - -enum AccountType - @join__type(graph: INSTRUMENT_SESSIONS) -{ - user @join__enumValue(graph: INSTRUMENT_SESSIONS) - staff @join__enumValue(graph: INSTRUMENT_SESSIONS) - functional @join__enumValue(graph: INSTRUMENT_SESSIONS) -} - -input AddSampleEventInput - @join__type(graph: SAMPLES) -{ - description: String! -} - -type Artifact - @join__type(graph: WORKFLOWS) -{ - """The file name of the artifact""" - name: String! - - """The download URL for the artifact""" - url: Url! - - """The MIME type of the artifact data""" - mimeType: String! -} - -input CreateOrValidateSampleInput - @join__type(graph: SAMPLES) -{ - """URL of the JSON schema the samples' `data` should be validated against""" - dataSchemaUrl: String! - - """Number of the proposal the samples should be associated with""" - proposalNumber: Int! - - """Number of the instrument session the samples should be associated with""" - instrumentSessionNumber: Int! - - """Samples to be created""" - samples: [SampleIn!]! - - """ - Whether or not the provided samples should only be validated and not created - """ - validateOnly: Boolean! = false -} - -input CreateSampleInput - @join__type(graph: SAMPLES) -{ - proposalNumber: Int! - instrumentSessionNumber: Int! - samples: [SampleInLegacy!]! - validateOnly: Boolean! = false -} - -"""Return type when creating or validating samples""" -type CreateSamplesResponse - @join__type(graph: SAMPLES) -{ - """Whether the operation has succeeded without validation errors""" - success: Boolean! - - """Samples that have been created""" - samples: [Sample!]! - - """Errors that occurred during sample validation""" - errors: [SampleValidationError!]! -} - -scalar Creator - @join__type(graph: WORKFLOWS) - -"""Date with time (isoformat)""" -scalar DateTime - @join__type(graph: INSTRUMENT_SESSIONS) - @join__type(graph: SAMPLES) - @join__type(graph: WORKFLOWS) - -input DatetimeOperatorInput - @join__type(graph: SAMPLES) -{ - """ - Will filter to items where the `DateTime` field is greater than (i.e. after) the provided value - """ - gt: DateTime = null - - """ - Will filter to items where the `DateTime` field is less than (i.e. before) the provided value - """ - lt: DateTime = null -} - -"""The details of sample validation error""" -type ErrorDetails - @join__type(graph: SAMPLES) -{ - """The type of error that occurred""" - type: String! - - """ - Tuple of strings identifying where in the sample schema the error occurred. - """ - location: [String!]! - - """A human readable error message.""" - message: String! -} - -type Instrument - @join__type(graph: INSTRUMENT_SESSIONS) -{ - name: String! - scienceGroup: String - description: String - proposals: [Proposal!]! - instrumentSessions: [InstrumentSession!]! -} - -type InstrumentSession - @join__type(graph: INSTRUMENT_SESSIONS) -{ - instrumentSessionId: Int! - instrumentSessionNumber: Int! - startTime: DateTime - endTime: DateTime - type: String - state: String - riskRating: String - proposal: Proposal - instrument: Instrument! - roles: [InstrumentSessionRole!]! -} - -type InstrumentSessionRole - @join__type(graph: INSTRUMENT_SESSIONS) -{ - instrumentSession: InstrumentSession! - account: Account! - role: String! - onSite: Boolean! -} - -scalar join__FieldSet - -enum join__Graph { - INSTRUMENT_SESSIONS @join__graph(name: "instrument_sessions", url: "https://instrument-sessions.diamond.ac.uk/api/graphql") - SAMPLES @join__graph(name: "samples", url: "https://sample-information.diamond.ac.uk/api/graphql") - WORKFLOWS @join__graph(name: "workflows", url: "https://workflows.diamond.ac.uk/graphql") -} - -""" -The `JSON` scalar type represents JSON values as specified by [ECMA-404](https://ecma-international.org/wp-content/uploads/ECMA-404_2nd_edition_december_2017.pdf). -""" -scalar JSON - @join__type(graph: SAMPLES) - @join__type(graph: WORKFLOWS) - @specifiedBy(url: "https://ecma-international.org/wp-content/uploads/ECMA-404_2nd_edition_december_2017.pdf") - -"""A scalar that can represent any JSON Object value.""" -scalar JSONObject - @join__type(graph: WORKFLOWS) - -scalar link__Import - -enum link__Purpose { - """ - `SECURITY` features provide metadata necessary to securely resolve fields. - """ - SECURITY - - """ - `EXECUTION` features provide metadata necessary for operation execution. - """ - EXECUTION -} - -"""A single log line streamed from a pod""" -type LogEntry - @join__type(graph: WORKFLOWS) -{ - """The log line content""" - content: String! - - """The name of the pod producing the log""" - podName: String! -} - -"""The root mutation of the service""" -type Mutation - @join__type(graph: SAMPLES) - @join__type(graph: WORKFLOWS) -{ - createSamples(input: CreateSampleInput!): [Sample!]! @join__field(graph: SAMPLES) @deprecated(reason: "Will be replaced by createOrValidateSamples") - createOrValidateSamples(input: CreateOrValidateSampleInput!): CreateSamplesResponse! @join__field(graph: SAMPLES) - sample(sampleId: UUID!): SampleMutations @join__field(graph: SAMPLES) - submitWorkflowTemplate(name: String!, visit: VisitInput!, parameters: JSON!): Workflow! @join__field(graph: WORKFLOWS) -} - -"""Information about pagination in a connection""" -type PageInfo - @join__type(graph: SAMPLES) - @join__type(graph: WORKFLOWS) -{ - """When paginating backwards, the cursor to continue.""" - startCursor: String - - """When paginating forwards, the cursor to continue.""" - endCursor: String - - """When paginating backwards, are there more items?""" - hasPreviousPage: Boolean! - - """When paginating forwards, are there more items?""" - hasNextPage: Boolean! -} - -type Proposal - @join__type(graph: INSTRUMENT_SESSIONS) -{ - proposalNumber: Int! - proposalCategory: String - title: String - summary: String - state: ProposalState! - instrumentSessions: [InstrumentSession!]! - instruments: [Instrument!]! - roles: [ProposalAccount!]! -} - -type ProposalAccount - @join__type(graph: INSTRUMENT_SESSIONS) -{ - proposal: Proposal! - account: Account! - role: String! -} - -enum ProposalState - @join__type(graph: INSTRUMENT_SESSIONS) -{ - Open @join__enumValue(graph: INSTRUMENT_SESSIONS) - Closed @join__enumValue(graph: INSTRUMENT_SESSIONS) - Cancelled @join__enumValue(graph: INSTRUMENT_SESSIONS) -} - -"""The root query of the service""" -type Query - @join__type(graph: INSTRUMENT_SESSIONS) - @join__type(graph: SAMPLES) - @join__type(graph: WORKFLOWS) -{ - """Get a proposal by its number""" - proposal(proposalNumber: Int!): Proposal @join__field(graph: INSTRUMENT_SESSIONS) - - """Get a list of proposals""" - proposals(proposalCategory: String = null): [Proposal!]! @join__field(graph: INSTRUMENT_SESSIONS) - - """Get a instrument session""" - instrumentSession(proposalNumber: Int!, instrumentSessionNumber: Int!): InstrumentSession @join__field(graph: INSTRUMENT_SESSIONS) - - """Get a instrument session""" - instrumentSessions(proposalNumber: Int = null, proposalCategory: String = null): [InstrumentSession!] @join__field(graph: INSTRUMENT_SESSIONS) - - """Get an instrument""" - instrument(instrumentName: String!): Instrument @join__field(graph: INSTRUMENT_SESSIONS) - - """Get a list of instruments""" - instruments(scienceGroup: String = null): [Instrument!]! @join__field(graph: INSTRUMENT_SESSIONS) - - """Get an account""" - account(username: String!): Account @join__field(graph: INSTRUMENT_SESSIONS) - - """Get a sample by its id""" - sample(sampleId: UUID!): Sample @join__field(graph: SAMPLES) - - """Get a list of samples associated with a given instrument session""" - samples(proposalNumber: Int!, instrumentSessionNumber: Int!, first: Int!, filter: SampleFilterInput! = {}, before: String = null, after: String = null, last: Int = null, orderBy: SampleOrder! = {}): SampleConnection! @join__field(graph: SAMPLES) - - """Get a single [`Workflow`] by proposal, visit, and name""" - workflow(visit: VisitInput!, name: String!): Workflow! @join__field(graph: WORKFLOWS) - workflows(visit: VisitInput!, cursor: String, limit: Int, filter: WorkflowFilter): WorkflowConnection! @join__field(graph: WORKFLOWS) - workflowTemplate(name: String!): WorkflowTemplate! @join__field(graph: WORKFLOWS) - workflowTemplates(cursor: String, limit: Int, filter: WorkflowTemplatesFilter): WorkflowTemplateConnection! @join__field(graph: WORKFLOWS) -} - -type Sample - @join__type(graph: SAMPLES) -{ - id: UUID! - name: String! - data: JSON! - createdTime: DateTime! - updatedTime: DateTime! - dataSchemaUrl: String! - - """Samples from which this sample is derived""" - parents(first: Int = null, before: String = null, after: String = null, last: Int = null): SampleConnection! - - """Samples derived from this sample""" - children(first: Int = null, before: String = null, after: String = null, last: Int = null): SampleConnection! - - """Events linked to this sample""" - events(first: Int = null, before: String = null, after: String = null, last: Int = null): SampleEventConnection! - - """The JSON schema that the sample's `data` conforms to""" - dataSchema: JSON! -} - -type SampleConnection - @join__type(graph: SAMPLES) -{ - edges: [SampleEdge!]! - pageInfo: PageInfo! -} - -type SampleEdge - @join__type(graph: SAMPLES) -{ - cursor: String! - node: Sample! -} - -type SampleEvent - @join__type(graph: SAMPLES) -{ - id: UUID! - timestamp: DateTime! - description: String! -} - -type SampleEventConnection - @join__type(graph: SAMPLES) -{ - edges: [SampleEventEdge!]! - pageInfo: PageInfo! -} - -type SampleEventEdge - @join__type(graph: SAMPLES) -{ - cursor: String! - node: SampleEvent! -} - -input SampleFilterInput - @join__type(graph: SAMPLES) -{ - """Filter on the `schemaUrl` field of `Sample`""" - schemaUrl: StringOperatorInput = null - - """Filter on the `createdTime` field of `Sample`""" - createdTime: DatetimeOperatorInput = null - - """Filter on the `createdTime` field of `Sample`""" - updatedTime: DatetimeOperatorInput = null - - """Filter on the `name` field of `Sample`""" - name: StringOperatorInput = null -} - -input SampleIn - @join__type(graph: SAMPLES) -{ - """Name of the sample""" - name: String! - - """Data of the sample""" - data: JSON! -} - -input SampleInLegacy - @join__type(graph: SAMPLES) -{ - name: String! - data: JSON! - dataSchemaUrl: String! - parentIds: [Int!] = null - children: [SampleInLegacy!] = null -} - -type SampleMutations - @join__type(graph: SAMPLES) -{ - sampleId: UUID! - linkInstrumentSessionToSample(proposalNumber: Int!, instrumentSessionNumber: Int!): Void - addSampleEvent(sampleEvent: AddSampleEventInput!): SampleEvent! -} - -input SampleOrder - @join__type(graph: SAMPLES) -{ - name: SortingOrder = null - createdTime: SortingOrder = null - updatedTime: SortingOrder = null -} - -"""The details of errors occurred when validating a sample""" -type SampleValidationError - @join__type(graph: SAMPLES) -{ - """ - The index of the sample in CreateSampleInput.samples for which the error occurred - """ - index: Int! - - """Errors that occurred when validating the sample""" - errors: [ErrorDetails!]! -} - -"""Supported DLS science groups""" -enum ScienceGroup - @join__type(graph: WORKFLOWS) -{ - """Macromolecular Crystallography""" - MX @join__enumValue(graph: WORKFLOWS) - - """Workflows Examples""" - EXAMPLES @join__enumValue(graph: WORKFLOWS) - - """Magnetic Materials""" - MAGNETIC_MATERIALS @join__enumValue(graph: WORKFLOWS) - - """Soft Condensed Matter""" - CONDENSED_MATTER @join__enumValue(graph: WORKFLOWS) - - """Imaging and Microscopy""" - IMAGING @join__enumValue(graph: WORKFLOWS) - - """Biological Cryo-Imaging""" - BIO_CRYO_IMAGING @join__enumValue(graph: WORKFLOWS) - - """Structures and Surfaces""" - SURFACES @join__enumValue(graph: WORKFLOWS) - - """Crystallography""" - CRYSTALLOGRAPHY @join__enumValue(graph: WORKFLOWS) - - """Spectroscopy""" - SPECTROSCOPY @join__enumValue(graph: WORKFLOWS) -} - -enum SortingOrder - @join__type(graph: SAMPLES) -{ - ASC @join__enumValue(graph: SAMPLES) - DESC @join__enumValue(graph: SAMPLES) -} - -"""Conditions used to filter results based on the value of a String field""" -input StringOperatorInput - @join__type(graph: SAMPLES) -{ - """ - Will filter to items where the `String` field is equal to the provided value - """ - eq: String = null - - """ - Will filter to items where the `String` field is not equal to the provided value - """ - ne: String = null - - """ - Will filter to items where the `String` field is a member of the provided value - """ - in: [String!] = null - - """ - Will filter to items where the `String` field is not a member of the provided value - """ - nin: [String!] = null - - """ - Will filter to items where the `String` field is contains the provided value - """ - contains: String = null -} - -"""The root mutation of the service""" -type Subscription - @join__type(graph: WORKFLOWS) -{ - """Processing to subscribe to logs for a single pod of a workflow""" - logs(visit: VisitInput!, workflowName: String!, taskId: String!): LogEntry! - - """Processing to subscribe to data for all workflows in a session""" - workflow(visit: VisitInput!, name: String!): Workflow! -} - -type Task - @join__type(graph: WORKFLOWS) -{ - """Unique name of the task""" - id: String! - - """Display name of the task""" - name: String! - - """Current status of a task""" - status: TaskStatus! - - """Parent of a task""" - depends: [String!]! - - """Children of a task""" - dependencies: [String!]! - - """Artifacts produced by a task""" - artifacts: [Artifact!]! - - """Node type - Pod, DAG, etc""" - stepType: String! - - """Start time for a task on a workflow""" - startTime: DateTime - - """End time for a task on a workflow""" - endTime: DateTime - - """ - A human readable message indicating details about why this step is in this condition - """ - message: String -} - -enum TaskStatus - @join__type(graph: WORKFLOWS) -{ - PENDING @join__enumValue(graph: WORKFLOWS) - RUNNING @join__enumValue(graph: WORKFLOWS) - SUCCEEDED @join__enumValue(graph: WORKFLOWS) - SKIPPED @join__enumValue(graph: WORKFLOWS) - FAILED @join__enumValue(graph: WORKFLOWS) - ERROR @join__enumValue(graph: WORKFLOWS) - OMITTED @join__enumValue(graph: WORKFLOWS) -} - -scalar Template - @join__type(graph: WORKFLOWS) - -""" -URL is a String implementing the [URL Standard](http://url.spec.whatwg.org/) -""" -scalar Url - @join__type(graph: WORKFLOWS) - -scalar UUID - @join__type(graph: SAMPLES) - -"""A visit to an instrument as part of a session""" -type Visit - @join__type(graph: WORKFLOWS) -{ - """Project Proposal Code""" - proposalCode: String! - - """Project Proposal Number""" - proposalNumber: Int! - - """Session visit Number""" - number: Int! -} - -"""A visit to an instrument as part of a session""" -input VisitInput - @join__type(graph: WORKFLOWS) -{ - """Project Proposal Code""" - proposalCode: String! - - """Project Proposal Number""" - proposalNumber: Int! - - """Session visit Number""" - number: Int! -} - -"""Represents NULL values""" -scalar Void - @join__type(graph: SAMPLES) - -type Workflow - @join__type(graph: WORKFLOWS) -{ - """The name given to the workflow, unique within a given visit""" - name: String! - - """The visit the Workflow was run against""" - visit: Visit! - - """The current status of the workflow""" - status: WorkflowStatus - - """The top-level workflow parameters""" - parameters: JSONObject - - """The name of the template used to run the workflow""" - templateRef: String - - """The workflow creator""" - creator: WorkflowCreator! -} - -type WorkflowConnection - @join__type(graph: WORKFLOWS) -{ - """Information to aid in pagination.""" - pageInfo: PageInfo! - - """A list of edges.""" - edges: [WorkflowEdge!]! - - """A list of nodes.""" - nodes: [Workflow!]! -} - -"""Information about the creator of a workflow.""" -type WorkflowCreator - @join__type(graph: WORKFLOWS) -{ - """ - An identifier unique to the creator of the workflow. - Typically this is the creator's Fed-ID. - """ - creatorId: String! -} - -"""An edge in a connection.""" -type WorkflowEdge - @join__type(graph: WORKFLOWS) -{ - """The item at the end of the edge""" - node: Workflow! - - """A cursor for use in pagination""" - cursor: String! -} - -"""All tasks in the workflow have errored""" -type WorkflowErroredStatus - @join__type(graph: WORKFLOWS) -{ - """Time at which this workflow started""" - startTime: DateTime! - - """Time at which this workflow completed""" - endTime: DateTime! - - """ - A human readable message indicating details about why the workflow is in this condition - """ - message: String - - """Tasks created by the workflow""" - tasks: [Task!]! -} - -"""All tasks in the workflow have failed""" -type WorkflowFailedStatus - @join__type(graph: WORKFLOWS) -{ - """Time at which this workflow started""" - startTime: DateTime! - - """Time at which this workflow completed""" - endTime: DateTime! - - """ - A human readable message indicating details about why the workflow is in this condition - """ - message: String - - """Tasks created by the workflow""" - tasks: [Task!]! -} - -"""All the supported Workflows filters""" -input WorkflowFilter - @join__type(graph: WORKFLOWS) -{ - """The status field for a workflow""" - workflowStatusFilter: WorkflowStatusFilter - - """The fedid of the user who created the workflow""" - creator: Creator - - """The name of the workflow template""" - template: Template -} - -type WorkflowPendingStatus - @join__type(graph: WORKFLOWS) -{ - """ - A human readable message indicating details about why the workflow is in this condition - """ - message: String -} - -type WorkflowRunningStatus - @join__type(graph: WORKFLOWS) -{ - """Time at which this workflow started""" - startTime: DateTime! - - """ - A human readable message indicating details about why the workflow is in this condition - """ - message: String - - """Tasks created by the workflow""" - tasks: [Task!]! -} - -"""The status of a workflow""" -union WorkflowStatus - @join__type(graph: WORKFLOWS) - @join__unionMember(graph: WORKFLOWS, member: "WorkflowPendingStatus") - @join__unionMember(graph: WORKFLOWS, member: "WorkflowRunningStatus") - @join__unionMember(graph: WORKFLOWS, member: "WorkflowSucceededStatus") - @join__unionMember(graph: WORKFLOWS, member: "WorkflowFailedStatus") - @join__unionMember(graph: WORKFLOWS, member: "WorkflowErroredStatus") - = WorkflowPendingStatus | WorkflowRunningStatus | WorkflowSucceededStatus | WorkflowFailedStatus | WorkflowErroredStatus - -"""Represents workflow status filters""" -input WorkflowStatusFilter - @join__type(graph: WORKFLOWS) -{ - pending: Boolean! = false - running: Boolean! = false - succeeded: Boolean! = false - failed: Boolean! = false - error: Boolean! = false -} - -"""All tasks in the workflow have succeded""" -type WorkflowSucceededStatus - @join__type(graph: WORKFLOWS) -{ - """Time at which this workflow started""" - startTime: DateTime! - - """Time at which this workflow completed""" - endTime: DateTime! - - """ - A human readable message indicating details about why the workflow is in this condition - """ - message: String - - """Tasks created by the workflow""" - tasks: [Task!]! -} - -type WorkflowTemplate - @join__type(graph: WORKFLOWS) -{ - """The name given to the workflow template, globally unique""" - name: String! - - """The group who maintains the workflow template""" - maintainer: String! - - """A human readable title for the workflow template""" - title: String - - """A human readable description of the workflow which is created""" - description: String - - """The repository storing the code associated with this template.""" - repository: String - - """A JSON Schema describing the arguments of a Workflow Template""" - arguments: JSON! - - """ - A JSON Forms UI Schema describing how to render the arguments of the Workflow Template - """ - uiSchema: JSON -} - -type WorkflowTemplateConnection - @join__type(graph: WORKFLOWS) -{ - """Information to aid in pagination.""" - pageInfo: PageInfo! - - """A list of edges.""" - edges: [WorkflowTemplateEdge!]! - - """A list of nodes.""" - nodes: [WorkflowTemplate!]! -} - -"""An edge in a connection.""" -type WorkflowTemplateEdge - @join__type(graph: WORKFLOWS) -{ - """The item at the end of the edge""" - node: WorkflowTemplate! - - """A cursor for use in pagination""" - cursor: String! -} - -"""Supported label filters for ClusterWorkflowTemplates""" -input WorkflowTemplatesFilter - @join__type(graph: WORKFLOWS) -{ - """The science group owning the template eg imaging""" - scienceGroup: [ScienceGroup!] -} \ No newline at end of file diff --git a/frontend/tomography/src/api/services.ts b/frontend/tomography/src/api/services.ts index 964b4529..dede16cf 100644 --- a/frontend/tomography/src/api/services.ts +++ b/frontend/tomography/src/api/services.ts @@ -103,17 +103,13 @@ export const proxyService = { tiffUrl: string, page: number, downsample_rate: number = 1 - ): Promise => { + ): Promise => { const response = await apiClient.get( `/proxy/tiff-pages?url=${encodeURIComponent(tiffUrl)}&page=${page}&downsample_rate=${downsample_rate}`, { responseType: "arraybuffer", } ); - - // Convert ArrayBuffer to base64 data URL instead of blob URL - const base64 = new Uint8Array(response.data).toBase64(); - - return `data:image/png;base64,${base64}`; + return new Uint8ClampedArray(response.data); }, }; diff --git a/frontend/tomography/src/components/crop/Contextbar.tsx b/frontend/tomography/src/components/crop/Contextbar.tsx index 4a3d8b16..84a04a3e 100644 --- a/frontend/tomography/src/components/crop/Contextbar.tsx +++ b/frontend/tomography/src/components/crop/Contextbar.tsx @@ -1,4 +1,4 @@ -import { Box, Button, Grid2, Tooltip } from "@mui/material"; +import { Box, Button, Grid, Tooltip } from "@mui/material"; import SaveOutlined from "@mui/icons-material/SaveOutlined"; import FileOpenOutlined from "@mui/icons-material/FileOpenOutlined"; import { useLoader, PreviewType } from "../../contexts/LoaderContext"; @@ -19,9 +19,9 @@ export default function Contextbar({ return ( - - - + + + - - - +
+ + - - - + + + ); } diff --git a/frontend/tomography/src/components/crop/Navbar.tsx b/frontend/tomography/src/components/crop/Navbar.tsx index e51eb2db..e16507ed 100644 --- a/frontend/tomography/src/components/crop/Navbar.tsx +++ b/frontend/tomography/src/components/crop/Navbar.tsx @@ -1,6 +1,6 @@ import { Box, - Grid2, + Grid, Slider, Input, Button, @@ -77,8 +77,8 @@ export default function ImageNavbar({ return ( - - + + - - + + - - + + Selection Mode