Error while running danbing-tk pred

[VenithaB]

Hello! I got the following two errors while trying to run danbing-tk pred:

Error 1: Using sample.tr.kmers file generated using danbing-tk align with the -on flag

terminate called after throwing an instance of 'std::invalid_argument'
  what():  stod
/var/spool/slurm/d/job54166555/slurm_script: line 23: 702267 Aborted                 (core dumped) ${DANBING}/danbing-tk-pred ${OUTDIR}/depth/trkmers.meta.txt ${RESOURCES}/ikmer.meta ${OUTDIR}/corrected.gt.tsv ${OUTDIR}/bias.tsv

This error seems to be resolved when using files generated using danbing-tk align with the -o flag. However, I ran into Error 2:

danbing-tk-pred: ./src/Eigen/src/Core/Block.h:147: Eigen::Block<XprType, BlockRows, BlockCols, InnerPanel>::Block(XprType&, Eigen::Index, Eigen::Index, Eigen::Index, Eigen::Index) [with XprType = Eigen::Array<double, -1, -1>; int BlockRows = -1; int BlockCols = -1; bool InnerPanel = false; Eigen::Index = long int]: Assertion `startRow >= 0 && blockRows >= 0 && startRow <= xpr.rows() - blockRows && startCol >= 0 && blockCols >= 0 && startCol <= xpr.cols() - blockCols' failed.
/storage/home/vab5299/scratch/danbing_analysis/vamos_srs_wg/hgsvc2_wg/test/danbing_hgsvc2_predict_test_run.sh: line 18: 3527198 Aborted                 (core dumped) ${DANBING}/danbing-tk-pred ${OUTDIR}/trkmers.meta.txt ${RESOURCES}/ikmer.meta ${OUTDIR}/corrected.gt.tsv ${OUTDIR}/bias.tsv

I used the same command for both runs, the only difference being whether the 'sample.tr.kmers file' contained locus and kmer names:

danbing-tk-pred trkmers.meta.txt ikmer.meta corrected.gt.tsv bias.tsv

I suspect the source of the second error is due to trkmers.meta.txt containing only 1 sample - I wanted to make sure the pipeline worked start to finish before processing the rest. I will try to run danbing-tk pred using the entire cohort and check if the error is resolved.