From 65a8a42977f36dfab0830e455c8d8d8189de164b Mon Sep 17 00:00:00 2001 From: martenson <1814954+martenson@users.noreply.github.com> Date: Wed, 21 Oct 2026 12:59:38 +0000 Subject: [PATCH] Update all tools of galaxy-umsa.grid.cesnet.cz --- .../chemicaltoolbox.yml.lock | 1 + galaxy-umsa.grid.cesnet.cz/ipapy2.yml.lock | 8 +++++++ .../machine_learning.yml.lock | 5 ++++ galaxy-umsa.grid.cesnet.cz/matchms.yml.lock | 15 ++++++++++++ galaxy-umsa.grid.cesnet.cz/mfassignr.yml.lock | 9 ++++++++ .../pre_processing.yml.lock | 4 ++++ galaxy-umsa.grid.cesnet.cz/qcxms.yml.lock | 3 +++ galaxy-umsa.grid.cesnet.cz/recetox.yml.lock | 23 +++++++++++++++++++ .../recetox_aplcms.yml.lock | 8 +++++++ .../table_manipulation.yml.lock | 6 +++++ .../text_manipulation.yml.lock | 1 + .../visualization.yml.lock | 2 ++ 12 files changed, 85 insertions(+) diff --git a/galaxy-umsa.grid.cesnet.cz/chemicaltoolbox.yml.lock b/galaxy-umsa.grid.cesnet.cz/chemicaltoolbox.yml.lock index 702de8d..6bf7db6 100644 --- a/galaxy-umsa.grid.cesnet.cz/chemicaltoolbox.yml.lock +++ b/galaxy-umsa.grid.cesnet.cz/chemicaltoolbox.yml.lock @@ -5,6 +5,7 @@ tools: - name: rem_complex owner: recetox revisions: + - 23623a7c6625 - 60db8070a5c3 - a0e07a0bc047 tool_panel_section_id: chemicaltoolbox diff --git a/galaxy-umsa.grid.cesnet.cz/ipapy2.yml.lock b/galaxy-umsa.grid.cesnet.cz/ipapy2.yml.lock index 9903e81..d282518 100644 --- a/galaxy-umsa.grid.cesnet.cz/ipapy2.yml.lock +++ b/galaxy-umsa.grid.cesnet.cz/ipapy2.yml.lock @@ -6,18 +6,21 @@ tools: - name: ipapy2_clustering owner: recetox revisions: + - 2ac09ae3f349 - cb18b8fcb441 tool_panel_section_id: ipapy2 tool_panel_section_label: ipapy2 - name: ipapy2_compute_all_adducts owner: recetox revisions: + - f7e4539d3b28 - f85a6d4e44b0 tool_panel_section_id: ipapy2 tool_panel_section_label: ipapy2 - name: ipapy2_compute_bio owner: recetox revisions: + - 089761593548 - ca72f5330bc9 tool_panel_section_id: ipapy2 tool_panel_section_label: ipapy2 @@ -25,17 +28,20 @@ tools: owner: recetox revisions: - 428abc41a101 + - 8b8e6103837c tool_panel_section_id: ipapy2 tool_panel_section_label: ipapy2 - name: ipapy2_gibbs_sampler owner: recetox revisions: + - 462109de1d47 - b2253cf7db76 tool_panel_section_id: ipapy2 tool_panel_section_label: ipapy2 - name: ipapy2_map_isotope_patterns owner: recetox revisions: + - 1888186ffd5e - 774152f21f29 tool_panel_section_id: ipapy2 tool_panel_section_label: ipapy2 @@ -43,11 +49,13 @@ tools: owner: recetox revisions: - 7f84a8a5edde + - ae9ff9ea1f95 tool_panel_section_id: ipapy2 tool_panel_section_label: ipapy2 - name: ipapy2_ms2_annotation owner: recetox revisions: - 6a23970e8093 + - d58fe3f9f5d0 tool_panel_section_id: ipapy2 tool_panel_section_label: ipapy2 diff --git a/galaxy-umsa.grid.cesnet.cz/machine_learning.yml.lock b/galaxy-umsa.grid.cesnet.cz/machine_learning.yml.lock index 06f68e3..e992ec2 100644 --- a/galaxy-umsa.grid.cesnet.cz/machine_learning.yml.lock +++ b/galaxy-umsa.grid.cesnet.cz/machine_learning.yml.lock @@ -7,6 +7,7 @@ tools: owner: bgruening revisions: - 5314ae25fbe1 + - e3d00d324fb7 - e8e5736b632d tool_panel_section_id: machine_learning tool_panel_section_label: Machine Learning @@ -15,12 +16,14 @@ tools: revisions: - 57938c2f6ef5 - 84dad16ed802 + - fd703ccdab66 tool_panel_section_id: machine_learning tool_panel_section_label: Machine Learning - name: sklearn_estimator_attributes owner: bgruening revisions: - 0a43c856e1d8 + - aa243478bb94 - fd51b7456c2a tool_panel_section_id: machine_learning tool_panel_section_label: Machine Learning @@ -28,6 +31,7 @@ tools: owner: bgruening revisions: - 3dd539570a60 + - 8ef3ef591dc8 - b6c2289292fa tool_panel_section_id: machine_learning tool_panel_section_label: Machine Learning @@ -42,5 +46,6 @@ tools: revisions: - 31fca3ff2a46 - c78a5fc9e758 + - f55053c4a5ec tool_panel_section_id: machine_learning tool_panel_section_label: Machine Learning diff --git a/galaxy-umsa.grid.cesnet.cz/matchms.yml.lock b/galaxy-umsa.grid.cesnet.cz/matchms.yml.lock index 7093575..ff7872d 100644 --- a/galaxy-umsa.grid.cesnet.cz/matchms.yml.lock +++ b/galaxy-umsa.grid.cesnet.cz/matchms.yml.lock @@ -10,6 +10,7 @@ tools: - 6ac4a790adad - 8f5a1e44b15c - a598091029ad + - b52e65169696 - cab0e4dcf372 tool_panel_section_id: matchms tool_panel_section_label: matchms @@ -17,6 +18,7 @@ tools: owner: recetox revisions: - 1fd950c5586a + - 8bf9df575761 - e052eac8be4a - e23c14cee5a9 - ec25de0f0c58 @@ -31,6 +33,7 @@ tools: - 51da674b945d - 69b568a0dab1 - 7c5b86026e57 + - 863a4e861982 - a5d41764722d - d5a50ec6035d tool_panel_section_id: matchms @@ -44,6 +47,7 @@ tools: - ad859b8036ad - c42b977ec884 - f04b378325e5 + - fd24cf34a92d tool_panel_section_id: matchms tool_panel_section_label: matchms - name: matchms_metadata_match @@ -51,6 +55,7 @@ tools: revisions: - 05a7fc94e66c - 330b0dfae8da + - 4105002c9a3b - 5c379988b7ea - 844d32c59314 - 9c9af0df1754 @@ -65,12 +70,14 @@ tools: - 77d6425daa07 - 7ba589b01dbc - 931cce430163 + - 9bca236ba1a9 - b2c7b7705734 tool_panel_section_id: matchms tool_panel_section_label: matchms - name: matchms_metadata_export owner: recetox revisions: + - 4f8a83c62c67 - 51205379251d - 67b885502624 - 86727e1d0866 @@ -86,6 +93,7 @@ tools: - 1ffbd537984f - a465cb84a388 - ad9d2d1b2b8d + - ccf5e216b6ee - fd890f162ce6 - fe9f3cd0b8dd tool_panel_section_id: matchms @@ -99,12 +107,14 @@ tools: - 9e83636da9d3 - bff7bfcf975e - d95450eba471 + - e3a46a3e8d54 tool_panel_section_id: matchms tool_panel_section_label: matchms - name: matchms_filtering owner: recetox revisions: - 07cac38cbd29 + - 360836810cd5 - 3f7790b73906 - 83c4b4359ac4 - a26afcf352fd @@ -115,6 +125,7 @@ tools: - name: matchms_split owner: recetox revisions: + - 0e61079af6d1 - 446fddefcee7 - 6864944b00fd - 7676700d7c4f @@ -131,12 +142,14 @@ tools: - 19367db5cf3c - 9843a619e9be - ef233c08112e + - f67250103433 - fbdb2ae524df tool_panel_section_id: matchms tool_panel_section_label: matchms - name: matchms_formatter owner: recetox revisions: + - 2d17d540ec2b - 5ab06f9104ec - 5fa29e292e12 - 604131c54f97 @@ -149,6 +162,7 @@ tools: owner: recetox revisions: - 27e068d0d89a + - 30e0b43373b8 - 6fa0150f6172 - 80df426e7e47 - c24ebd41dd53 @@ -162,6 +176,7 @@ tools: - 037465757927 - 314dc0e8bf3f - 535eadf882a3 + - 66261e0e5f7c - 8aa0014a5ad4 tool_panel_section_id: matchms tool_panel_section_label: matchms diff --git a/galaxy-umsa.grid.cesnet.cz/mfassignr.yml.lock b/galaxy-umsa.grid.cesnet.cz/mfassignr.yml.lock index 3057c64..695acb8 100644 --- a/galaxy-umsa.grid.cesnet.cz/mfassignr.yml.lock +++ b/galaxy-umsa.grid.cesnet.cz/mfassignr.yml.lock @@ -7,6 +7,7 @@ tools: revisions: - 7279d7a37c43 - 7579b0cda787 + - 8e5acbf5589b - ccd9b0c1aee6 - f19c0631b9e5 tool_panel_section_id: mfassignr @@ -17,11 +18,13 @@ tools: - 5d99cb9755da - 5dd25cf1ac0a - 9654573e6889 + - df906aafac0d tool_panel_section_id: mfassignr tool_panel_section_label: mfassignr - name: mfassignr_kmdnoise owner: recetox revisions: + - 61287368a95d - 634ae07958a2 - 99d021734000 - a7a823839ae3 @@ -33,6 +36,7 @@ tools: - 079ae9aa6ed5 - 1c199c3d5993 - b880fcae60ea + - d512c47f721d - e4ddc3bc7e15 - ef0388b42f7a tool_panel_section_id: mfassignr @@ -44,11 +48,13 @@ tools: - 22c80f584bb1 - 4422c60a4b71 - 9cbbfd54d7c4 + - d79690df2e83 tool_panel_section_id: mfassignr tool_panel_section_label: mfassignr - name: mfassignr_mfassigncho owner: recetox revisions: + - 4d10bce8c07e - 59326d3b9c52 - 5ea9dd423109 - da64d663694b @@ -60,6 +66,7 @@ tools: revisions: - 13ef8b748af9 - 861917f1a211 + - 91af26deeb98 - cfcf45ba58be tool_panel_section_id: mfassignr tool_panel_section_label: mfassignr @@ -69,6 +76,7 @@ tools: - 4f671baab2fd - 6c7b17d38a1d - 7e5ccc8b6f6e + - d3dfaa7496a2 tool_panel_section_id: mfassignr tool_panel_section_label: mfassignr - name: mfassignr_findrecalseries @@ -76,5 +84,6 @@ tools: revisions: - 18e13043167d - 1b4881c150cc + - eea4113efc99 tool_panel_section_id: mfassignr tool_panel_section_label: mfassignr diff --git a/galaxy-umsa.grid.cesnet.cz/pre_processing.yml.lock b/galaxy-umsa.grid.cesnet.cz/pre_processing.yml.lock index 048335c..8d24b1a 100644 --- a/galaxy-umsa.grid.cesnet.cz/pre_processing.yml.lock +++ b/galaxy-umsa.grid.cesnet.cz/pre_processing.yml.lock @@ -7,12 +7,14 @@ tools: revisions: - 4018639dc0a5 - 4787c71cdb6e + - ba8b0743be69 tool_panel_section_id: pre_processing tool_panel_section_label: Pre-processing - name: bioconductor_msnbase_smooth_chromatogram owner: recetox revisions: - 09162867c419 + - 216309c67d4a - 492350f45be9 tool_panel_section_id: pre_processing tool_panel_section_label: Pre-processing @@ -21,6 +23,7 @@ tools: revisions: - 00e058234fbf - 430dd5da800c + - 8e6a8e183398 tool_panel_section_id: pre_processing tool_panel_section_label: Pre-processing - name: bioconductor_mzr @@ -33,6 +36,7 @@ tools: - name: pybaselines owner: recetox revisions: + - 053ba9eae975 - 73ba705e105c tool_panel_section_id: pre_processing tool_panel_section_label: Pre-processing diff --git a/galaxy-umsa.grid.cesnet.cz/qcxms.yml.lock b/galaxy-umsa.grid.cesnet.cz/qcxms.yml.lock index 7be2028..0e81d70 100644 --- a/galaxy-umsa.grid.cesnet.cz/qcxms.yml.lock +++ b/galaxy-umsa.grid.cesnet.cz/qcxms.yml.lock @@ -6,6 +6,7 @@ tools: owner: recetox revisions: - 33b7a99b6de3 + - 3862d7fc6f7e - 475bbef634d4 - c40784ec1fdd tool_panel_section_id: qcxms @@ -13,6 +14,7 @@ tools: - name: qcxms_production_run owner: recetox revisions: + - 1c7e10729065 - 356f7916ac07 - 69ba95cdcff2 - cbe34f060712 @@ -24,5 +26,6 @@ tools: - 0109f244d25a - 720958b09af4 - 89b026d67e9f + - d488b9391103 tool_panel_section_id: qcxms tool_panel_section_label: QCxMS diff --git a/galaxy-umsa.grid.cesnet.cz/recetox.yml.lock b/galaxy-umsa.grid.cesnet.cz/recetox.yml.lock index a8dbcc6..84facf9 100644 --- a/galaxy-umsa.grid.cesnet.cz/recetox.yml.lock +++ b/galaxy-umsa.grid.cesnet.cz/recetox.yml.lock @@ -5,6 +5,7 @@ tools: - name: recetox_msfinder owner: recetox revisions: + - 0a9f3bcf620b - a48a1c23257c - e7eff0c9baa3 tool_panel_section_id: recetox @@ -13,6 +14,7 @@ tools: owner: recetox revisions: - 1dc9f5a3163d + - 23623a7c6625 - 567327a97ad2 - 60db8070a5c3 - a0e07a0bc047 @@ -21,6 +23,7 @@ tools: - name: msmetaenhancer owner: recetox revisions: + - '275998667516' - 3b402610c6dc - 3e2cb0bc6959 - 560053b805d2 @@ -36,11 +39,13 @@ tools: - 6e1ef071fffc - cba7123c2741 - d5633eaf3552 + - d5ee22b95891 tool_panel_section_id: recetox tool_panel_section_label: RECETOX - name: recetox_xmsannotator_advanced owner: recetox revisions: + - 28b87af0fdd3 - 2c6fa447f6a0 - 6b5dec818827 tool_panel_section_id: recetox @@ -53,6 +58,7 @@ tools: - 6480c6d5fa36 - 6fc9f6dbcef5 - 821062fc5782 + - 9c417575eb83 - bf28a0fc0db6 - bf32ae95a06f - e9fa79966366 @@ -62,6 +68,7 @@ tools: owner: recetox revisions: - 050cfef6ba65 + - bfdf5de99cd2 - da7722f665f4 - f52181a205d3 tool_panel_section_id: recetox @@ -72,6 +79,7 @@ tools: - 0b28816c1c2c - 5a6bb93ec656 - 60c2da112839 + - 7b210a74628f tool_panel_section_id: recetox tool_panel_section_label: RECETOX - name: biotransformer @@ -81,6 +89,7 @@ tools: - 0f1b15d51801 - 200c5c982dba - 6cd2a9e6ac49 + - 731e5d54b6e6 - e5fcba090b10 tool_panel_section_id: recetox tool_panel_section_label: RECETOX @@ -94,6 +103,7 @@ tools: - name: riassigner owner: recetox revisions: + - 3af9c2de8522 - 984d5fa7acf5 - 9b2fe4c49ecb - af25aa61c611 @@ -104,6 +114,7 @@ tools: owner: recetox revisions: - 25625114618e + - b0a739025b81 - ef3cbcdf5f5d - f2c1d0bbb074 tool_panel_section_id: recetox @@ -113,6 +124,7 @@ tools: revisions: - 6c5df3eeb768 - 72b687d21f65 + - b8aa2773157b tool_panel_section_id: recetox tool_panel_section_label: RECETOX - name: thermo_raw_file_converter @@ -127,6 +139,7 @@ tools: revisions: - 6975af39ba79 - 7226eba9c09d + - 81a28257f086 - 97ccdb1ba47c - e2fa3b23d7db tool_panel_section_id: recetox @@ -135,6 +148,7 @@ tools: owner: recetox revisions: - 268fcec93d9c + - 3704e4bf393c tool_panel_section_id: recetox tool_panel_section_label: RECETOX - name: spec2vec_similarity @@ -147,6 +161,7 @@ tools: owner: recetox revisions: - 320ebaa133e5 + - 3c05a813ca00 - 54401f9d1a30 - 648f82934b56 - 9b4b624c4d60 @@ -156,6 +171,7 @@ tools: - name: ms2deepscore_config_generator owner: recetox revisions: + - 08f0551d3a53 - 7e4ac334fc33 tool_panel_section_id: recetox tool_panel_section_label: RECETOX @@ -163,12 +179,14 @@ tools: owner: recetox revisions: - 58c95171a0d3 + - fc1bd4589e89 tool_panel_section_id: recetox tool_panel_section_label: RECETOX - name: ms2deepscore_training owner: recetox revisions: - 0a0529822d91 + - 7c7422ce0cc7 tool_panel_section_id: recetox tool_panel_section_label: RECETOX - name: target_screen @@ -183,6 +201,7 @@ tools: owner: recetox revisions: - 06f2d0d6d107 + - 0cf5061ad158 - 2b1118bce0b1 - 964b4559eb1b - a0a6127a7a69 @@ -200,18 +219,21 @@ tools: owner: recetox revisions: - 02cf8faa2cd2 + - 18a35dda66c7 tool_panel_section_id: recetox tool_panel_section_label: RECETOX - name: mzspeclib_describe owner: recetox revisions: - 4484e5822a6b + - 8cf9762e5e55 tool_panel_section_id: recetox tool_panel_section_label: RECETOX - name: mzspeclib_validate owner: recetox revisions: - 884e26ef99ce + - e7b9920297c4 tool_panel_section_id: recetox tool_panel_section_label: RECETOX - name: mztabm_validate @@ -225,6 +247,7 @@ tools: revisions: - 1c2a8760ad2b - ddabfd6ee2a2 + - e269a8be9cee tool_panel_section_id: recetox tool_panel_section_label: RECETOX - name: use_theoretical_mz_annotations diff --git a/galaxy-umsa.grid.cesnet.cz/recetox_aplcms.yml.lock b/galaxy-umsa.grid.cesnet.cz/recetox_aplcms.yml.lock index bf2fe5d..f311b7a 100644 --- a/galaxy-umsa.grid.cesnet.cz/recetox_aplcms.yml.lock +++ b/galaxy-umsa.grid.cesnet.cz/recetox_aplcms.yml.lock @@ -7,6 +7,7 @@ tools: revisions: - 04892b463957 - 17a48d0a80f4 + - a19c6aff07c3 - b7c8a44b9cc1 - cf061712a184 - dd7bbc2b99d1 @@ -19,12 +20,14 @@ tools: - 481d769e2f7a - 4963811b6dec - 50b9918aeff2 + - 9f28366efd73 - dfebc82ba1f0 tool_panel_section_id: recetox_aplcms tool_panel_section_label: recetox-aplcms - name: recetox_aplcms_generate_feature_table owner: recetox revisions: + - 5d836cb06710 - 6ba3526237e0 - 89178a72388a - b3413f335327 @@ -37,6 +40,7 @@ tools: revisions: - 7acd11ddc061 - b5a1f35abd8a + - d646c4675c1c - d90187b0f247 - ea0758b41473 - ffbabefbd2e2 @@ -49,6 +53,7 @@ tools: - 1574b8a29e6f - 501a232f3cd5 - 51332c2520c7 + - 8dcef51593a3 - 9064aecc78a7 - a82db010c53e tool_panel_section_id: recetox_aplcms @@ -58,6 +63,7 @@ tools: revisions: - 149b9cc7499b - 18ec7635bac6 + - 3078953f7537 - 59c393d35e0e - b9b19a74ac01 - f3a18e020cdd @@ -66,6 +72,7 @@ tools: - name: recetox_aplcms_align_features owner: recetox revisions: + - 35467fe49dad - 79ad928a0dae - 7b42ee54d757 - c53a97599181 @@ -78,6 +85,7 @@ tools: revisions: - 24278c6b6d1c - 99d118321d5f + - d356ca2c2423 - d7f5878a98c3 - e0536ff73f36 - f92b1b64da93 diff --git a/galaxy-umsa.grid.cesnet.cz/table_manipulation.yml.lock b/galaxy-umsa.grid.cesnet.cz/table_manipulation.yml.lock index 39ee023..c90cb17 100644 --- a/galaxy-umsa.grid.cesnet.cz/table_manipulation.yml.lock +++ b/galaxy-umsa.grid.cesnet.cz/table_manipulation.yml.lock @@ -8,12 +8,14 @@ tools: - 19968a1b4068 - 8b5b5236065c - d4bacc06365e + - ee251b963553 tool_panel_section_id: table_manipulation tool_panel_section_label: Table Manipulation - name: table_pandas_rename_column owner: recetox revisions: - 3f54cd56a65e + - 63273927b45d - 761f8ab8fdb6 - 8537763e4713 tool_panel_section_id: table_manipulation @@ -24,11 +26,13 @@ tools: - 334f765b6c1b - 505a8e975968 - 628a75ad9685 + - 82ab8a586ccd tool_panel_section_id: table_manipulation tool_panel_section_label: Table Manipulation - name: table_pandas_transform owner: recetox revisions: + - 1be516027019 - b722dba91064 - e4b861ab3ef7 - eaddbdff9dbf @@ -38,6 +42,7 @@ tools: owner: recetox revisions: - 0112f08c95ed + - 0937f56cb815 - 3ccffbd647fe - ac42a5982210 tool_panel_section_id: table_manipulation @@ -53,6 +58,7 @@ tools: owner: recetox revisions: - 91a8fabef6b1 + - cc8769e12aae tool_panel_section_id: table_manipulation tool_panel_section_label: Table Manipulation - name: datamash_ops diff --git a/galaxy-umsa.grid.cesnet.cz/text_manipulation.yml.lock b/galaxy-umsa.grid.cesnet.cz/text_manipulation.yml.lock index 41459b8..6962bad 100644 --- a/galaxy-umsa.grid.cesnet.cz/text_manipulation.yml.lock +++ b/galaxy-umsa.grid.cesnet.cz/text_manipulation.yml.lock @@ -16,6 +16,7 @@ tools: revisions: - 10ef1bf99074 - 156d0908e232 + - 2dfd91f7b71d - 95a9dc82fc9a - be2d899bf34a tool_panel_section_id: text_manipulation diff --git a/galaxy-umsa.grid.cesnet.cz/visualization.yml.lock b/galaxy-umsa.grid.cesnet.cz/visualization.yml.lock index 61b40d8..17355e2 100644 --- a/galaxy-umsa.grid.cesnet.cz/visualization.yml.lock +++ b/galaxy-umsa.grid.cesnet.cz/visualization.yml.lock @@ -42,6 +42,7 @@ tools: - 6b9816a913de - 6fc8bab811da - b0d96516e6a5 + - bf96015d2492 tool_panel_section_id: visualization tool_panel_section_label: Visualization - name: ggplot2_heatmap2 @@ -126,6 +127,7 @@ tools: - name: rcx_boxplot owner: recetox revisions: + - 2ca0bcd7f0b6 - bbd2128c33b4 - ebb0730f6175 tool_panel_section_id: visualization